Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M18
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   225   5e-60
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   222   3e-59
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    35   0.008
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   1.5  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   1.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.0  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.5  
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    26   4.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.1  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  225 bits (549), Expect = 5e-60
 Identities = 112/188 (59%), Positives = 128/188 (68%)
 Frame = +1

Query: 1   ETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXX 180
           ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +CILGD    D AK   V  M    
Sbjct: 29  ETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDD 88

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKID 360
                                  SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI 
Sbjct: 89  LKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKII 148

Query: 361 EVKGTIKFQMKKVLCLSVAVGHVDLTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 540
           EVK TIKFQ+KKVLCL VAVGHVD+  ++LA N+ L+INFLVSLLKK WQN+ SL +KST
Sbjct: 149 EVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKST 208

Query: 541 MGPPQRLY 564
           MG P RLY
Sbjct: 209 MGKPYRLY 216


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  222 bits (542), Expect = 3e-59
 Identities = 109/188 (57%), Positives = 128/188 (68%)
 Frame = +1

Query: 1   ETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXX 180
           ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +CILGD    D AK   V  M    
Sbjct: 29  ETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDD 88

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKID 360
                                  SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI 
Sbjct: 89  LKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKIT 148

Query: 361 EVKGTIKFQMKKVLCLSVAVGHVDLTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 540
           EVK TIKFQ+KKVLCL VAVGHV+++ ++L  N+ L++NFLVSLLKK WQN+ SL +KST
Sbjct: 149 EVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKST 208

Query: 541 MGPPQRLY 564
           MG P RLY
Sbjct: 209 MGKPHRLY 216


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = +1

Query: 253 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 420
           + +I  +PR+LG    +  K P  +       E + +++    G   F         +  
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203

Query: 421 GHVDLTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 540
           GHV  T  ELA+NV   + F+   ++    + + S+H+K++
Sbjct: 204 GHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 446 SSGVKST*PTATDRHNTFFIWNLMVPLTSSIFC 348
           S+G K +  T T+R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 435 QVDVTDGHRQAQHLLHLEFDGSLDFINFLC 346
           Q DV+ G  +  HL     DG LDFIN +C
Sbjct: 598 QTDVS-GACELVHLASEGLDGELDFINVIC 626


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = +1

Query: 346  TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDLTPDEL----AQNVHLSINFLVSLLKK 501
            T++I+   GT+          V  LS+A+G+++  P  L      N H+S+  L  L+K 
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741

Query: 502  HW 507
            H+
Sbjct: 2742 HY 2743


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 390 EEGVVPVCGRRSRRLDSR*TCPKCAPFN 473
           E  V  +C ++ R  +S   CP C P +
Sbjct: 95  ESNVCSMCSKQERTFESEAFCPSCYPLD 122


>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 573 VNVIQSLGWSHXRLHMQRAHIL 508
           + + QSLGW    +H+   HIL
Sbjct: 74  LGITQSLGWEMYEVHVPEPHIL 95


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 250  SESLIKQIPRLLGPGLNKA-GKFPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSVAVG 423
            S+ ++    R++G    K    F  +++   S    +DE++ +  K +  ++LC  VA G
Sbjct: 1733 SQLVLHGFQRVIGDNPVKGVAAFQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIVACG 1792

Query: 424  HVD 432
            H+D
Sbjct: 1793 HID 1795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,550
Number of Sequences: 5004
Number of extensions: 39638
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)