Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_M18
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 256 1e-68
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 239 1e-63
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 194 5e-50
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 40 0.002
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 30 1.4
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.4
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.4
Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z83246-1|CAB05842.2| 312|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z79753-7|CAB02085.2| 448|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 7.4
AC025726-28|AAK73928.1| 118|Caenorhabditis elegans Hypothetical... 27 7.4
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z68161-6|CAA92295.2| 782|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF149286-1|AAF99085.1| 782|Caenorhabditis elegans KRP95 protein. 27 9.8
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 256 bits (626), Expect = 1e-68
Identities = 119/188 (63%), Positives = 141/188 (75%)
Frame = +1
Query: 1 ETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXX 180
ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP M+VC+ GDQ H DEA D+P M
Sbjct: 29 ETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADD 88
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKID 360
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K D
Sbjct: 89 LKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSD 148
Query: 361 EVKGTIKFQMKKVLCLSVAVGHVDLTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 540
E++ T+KFQMKKVLCLSVAVGHV LT +EL N+ LSINFLVSLLKK+WQNVRSL++KST
Sbjct: 149 EIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKST 208
Query: 541 MGPPQRLY 564
MG PQR+Y
Sbjct: 209 MGKPQRVY 216
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 239 bits (585), Expect = 1e-63
Identities = 111/179 (62%), Positives = 132/179 (73%)
Frame = +1
Query: 28 KNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXX 207
KNYDPQKDKRFSG+++LK+IPRP M+VC+ GDQ H DEA D+P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 208 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 387
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQ
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127
Query: 388 MKKVLCLSVAVGHVDLTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 564
MKKVLCLSVAVGHV LT +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 194 bits (472), Expect = 5e-50
Identities = 92/155 (59%), Positives = 109/155 (70%)
Frame = +1
Query: 100 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 279
M+VC+ GDQ H DEA D+P M SESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 280 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDLTPDELAQN 459
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV LT +EL N
Sbjct: 61 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120
Query: 460 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 564
+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 121 ISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/102 (21%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = +1
Query: 271 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDLTPDE 447
+ LG +A K P +Q+ ++ I+ T+ + +++ + S V VGH+ + +
Sbjct: 317 VKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSAD 376
Query: 448 LAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLYYIN 573
L +N+ + + S + N+RS+++ ++ G P Y++
Sbjct: 377 LKENIDTVLEKIASKCPGGFANIRSIYLGASDGKPSLPIYVD 418
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 292 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDLTPDELAQNVHLS 471
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 472 INFLVSLLKKH-WQNVRSL 525
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 292 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDLTPDELAQNVHLS 471
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 472 INFLVSLLKKH-WQNVRSL 525
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 292 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDLTPDELAQNVHLS 471
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 472 INFLVSLLKKH-WQNVRSL 525
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical
protein C49F8.1 protein.
Length = 407
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 409 SVAVGHVDLTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 552
SV + H+ ++P+ L Q L+ F + W+ +R MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393
>Z83246-1|CAB05842.2| 312|Caenorhabditis elegans Hypothetical
protein ZK795.1 protein.
Length = 312
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 7 VELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQH 132
++L++G YDP ++KY P+ KM + ILG + H
Sbjct: 135 LDLKMGQVTYDPIAKPEKIEKERIKYPPQAKMGMRILGYRIH 176
>Z79753-7|CAB02085.2| 448|Caenorhabditis elegans Hypothetical
protein F20G2.5 protein.
Length = 448
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 441 WSQVDVTDGHRQAQHL-LHLEFDGSLDFINFLCHGFLVG*ETRELASLIETRTKETRNL 268
++Q V G R + EF GS D +FL + +VG + +ET TK T NL
Sbjct: 373 FNQTAVNTGSRSVYGTYMSTEFTGSTDISSFLLNFEIVGNPATATTAQLETTTK-TANL 430
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 262 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 381
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
>AC025726-28|AAK73928.1| 118|Caenorhabditis elegans Hypothetical
protein Y71G12B.27 protein.
Length = 118
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 567 VIQSLGWSHXRLHMQRAHIL 508
V QSLGW H +H HIL
Sbjct: 46 VQQSLGWEHYMVHNPEKHIL 65
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
protein F20C5.2b protein.
Length = 1130
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 101 ILGRGMYLSLTVPEKRLSFCG 39
I G G ++ T+PE+ + FCG
Sbjct: 665 ISGSGSFVEATIPEETIRFCG 685
>Z68161-6|CAA92295.2| 782|Caenorhabditis elegans Hypothetical
protein F20C5.2a protein.
Length = 782
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 101 ILGRGMYLSLTVPEKRLSFCG 39
I G G ++ T+PE+ + FCG
Sbjct: 679 ISGSGSFVEATIPEETIRFCG 699
>AF149286-1|AAF99085.1| 782|Caenorhabditis elegans KRP95 protein.
Length = 782
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 101 ILGRGMYLSLTVPEKRLSFCG 39
I G G ++ T+PE+ + FCG
Sbjct: 679 ISGSGSFVEATIPEETIRFCG 699
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,800
Number of Sequences: 27780
Number of extensions: 235967
Number of successful extensions: 545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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