Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_M17
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 57 1e-08
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 54 7e-08
11_02_0012 - 7346282-7347136,7347234-7347593 52 4e-07
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 45 4e-05
11_01_0771 + 6453130-6454488 41 5e-04
11_01_0750 - 6315126-6315896,6316371-6316784 39 0.003
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 31 0.44
05_03_0246 + 10895627-10895829,10897012-10897078,10898258-108984... 30 1.0
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 29 1.8
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 28 4.1
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 28 4.1
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 27 9.5
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 56.8 bits (131), Expect = 1e-08
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Frame = +3
Query: 3 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTN--EV-DVYLPKFKCETTTNLKEV 173
S+ + LP++ DGL AL +K+ S + + T EV D+ +P+FK + + V
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGV 322
Query: 174 LQAMNVKKLFEPGQARLDXLL----KNGGDLYVSEAVQKAFIXXXXXXXXXXXXXXFGIT 341
LQ M V F+ G+A L + + GG L V E +A + I
Sbjct: 323 LQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIR 382
Query: 342 YLSAFISEPIIFNADHPYYYFL 407
LS +S P F ADHP+ +F+
Sbjct: 383 LLS--MSYPEDFVADHPFAFFV 402
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 54.0 bits (124), Expect = 7e-08
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +3
Query: 3 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCETTTNLKEVLQA 182
S+ ++LP DGL +L EKL + LE+ LPKFK ++L++
Sbjct: 314 SMYILLPEAQDGLWSLAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKISFGFEASDLLKS 373
Query: 183 MNVKKLFEPGQARLDXLLKN--GGDLYVSEAVQKAFIXXXXXXXXXXXXXXFGITYLSAF 356
+ + F +A L ++ + G +L+VS K+F+ IT SA
Sbjct: 374 LGLHLPFS-SEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSAP 432
Query: 357 ISEPIIFNADHPYYYFL-KGRDNIIYFTG 440
I+E F ADHP+ + + + ++ F G
Sbjct: 433 IAED--FVADHPFLFLIQEDMTGVVLFVG 459
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 2/148 (1%)
Frame = +3
Query: 3 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCETTTNLKEVLQA 182
S+ ++LP DGL +L EKL + +E + LPKFK +L+
Sbjct: 566 SMYILLPEAQDGLWSLAEKLNSEPEFMENHIPMRPVHVGQFKLPKFKISFGFGASGLLKG 625
Query: 183 MNVKKLFEPGQARLDXLLKNGG-DLYVSEAVQKAFIXXXXXXXXXXXXXXFGITYLSAFI 359
+ + LF ++ + G +L+VS K+FI + +
Sbjct: 626 LGLPLLFGSEVDLIEMVDSPGAQNLFVSSVFHKSFIEVNEEGTEATAAVMVSMEHSR--- 682
Query: 360 SEPIIFNADHPYYYFLK-GRDNIIYFTG 440
+ F ADHP+ + ++ +I F G
Sbjct: 683 PRRLNFVADHPFMFLIREDVTGVILFIG 710
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 51.6 bits (118), Expect = 4e-07
Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Frame = +3
Query: 3 SLLVVLPNKIDGLHALEEKLK------KDLSVLERAQQNMYTNEV-DVYLPKFKCETTTN 161
S+ + LP+ DGL AL +K+ S L + +V D+ +P+FK +
Sbjct: 243 SMYIFLPDARDGLPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRFKVSFYSE 302
Query: 162 LKEVLQAMNVKKLFEPGQARLDXLLKNGGDLYVSEAVQKAFIXXXXXXXXXXXXXXFGIT 341
+ EVL+ M + F+ G+ L ++ +G + V + + +A + +
Sbjct: 303 MNEVLKGMGIGAAFDVGKVDLSGMI-DGELVVVEKVMHRAVVEVNEEGTEAAAATACTMK 361
Query: 342 YLSAFISEPIIFNADHPYYYF-LKGRDNIIYFTG 440
+L ++ P+ F ADHP+ +F ++ + + + F G
Sbjct: 362 FLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAG 395
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 44.8 bits (101), Expect = 4e-05
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +3
Query: 3 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCETTTNLKEVLQA 182
S+ ++LP DGL +L KL + LE+ LPKFK ++L+
Sbjct: 106 SMYILLPEAQDGLWSLAAKLNSEPEFLEKRIPTRQVTVGKFKLPKFKISFGFEASDLLKI 165
Query: 183 MNVKKLFEPGQARLDXLL--KNGGDLYVSEAVQKAFIXXXXXXXXXXXXXXFGITYLSAF 356
+ ++ F +A L ++ +L+VS K+F+ +++ SA
Sbjct: 166 LGLQLPFS-SKADLTGMVGSPERHNLFVSSLFHKSFVQVDEEGTEAAAASAAVVSFRSAP 224
Query: 357 ISEPIIFNADHPYYYFLK-GRDNIIYFTG 440
++ + F ADHP+ + ++ ++ F G
Sbjct: 225 VT--VDFVADHPFLFLIREDMTGVVLFIG 251
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.1 bits (92), Expect = 5e-04
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
Frame = +3
Query: 3 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVY-LPKFKCETTTNLKEVLQ 179
++ + LP+ DGL L E++ L + V + +PKFK ++ L+
Sbjct: 295 AMAIFLPDARDGLRGLVERMASRPGFLHEHMPAAWPVPVGEFRVPKFKVSCGGSVVGALE 354
Query: 180 AMNVKKLFEPGQARLDXLLKNGGD---LYVSEAVQKAFIXXXXXXXXXXXXXXFGITYLS 350
+ ++ F P A L ++++ G L+V + KA I + S
Sbjct: 355 QLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIEVNEEGTVAAAATMTRMLP-S 413
Query: 351 AFISEPIIFNADHPYYYFL-KGRDNIIYFTG 440
P+ F A+HP+ YF+ + + + F G
Sbjct: 414 GVPPPPVDFVAEHPFAYFIVEEMSSAVVFAG 444
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 38.7 bits (86), Expect = 0.003
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Frame = +3
Query: 3 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNE--VDVYLPKFKCETTTNLKEVL 176
S+ + LP+ DGL L +K+ + LE Q++ T + V + +P FK ++K+ L
Sbjct: 243 SMYIFLPDDHDGLFELTQKIFSEPMFLE---QHLPTEKCHVGISVPNFKISFQIDVKDFL 299
Query: 177 QAMNVKKLFEPGQARLDXLLK---NGGDLYVSEAVQKAFIXXXXXXXXXXXXXXFGITYL 347
+ M ++ F +A ++K + G L++S+ + KA + T +
Sbjct: 300 KDMGLELPF-LREAEFSDMIKEDDSSGPLFLSDVLHKAVLEVDQKGIEE--------TSV 350
Query: 348 SAFISEPI---IFNADHPYYYFLK 410
S + +P+ F ADHP+++ ++
Sbjct: 351 SMGLGKPLPAQHFKADHPFFFMIR 374
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 428 NNVVSSFKEVIVGVVCIKYYRF*DERTQIRYSELISSGRFSSFFV 294
NN +SFK + C+ YYR ++R ++R ++SG+ + ++
Sbjct: 679 NNRPNSFKVLSPPRTCVAYYRVDEDREELRRGGAVASGKIVTEYI 723
>05_03_0246 +
10895627-10895829,10897012-10897078,10898258-10898433,
10898450-10898583,10900165-10901594
Length = 669
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 27 KIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCETTTNLKEVLQAMNVKKL 200
KI G L ++++ L VL Q Y ++YL + T + EV+Q +KK+
Sbjct: 603 KIHGNIELSAQIREKLIVLGGQQPGRYVTVRNMYLEEGNWYAATRMGEVMQEAGIKKI 660
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 27 KIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCETTTNLKEVLQAMNVKKLFE 206
KIDG A+ KLK++L+ ER +++ +V + K K E ++ QA+ +K E
Sbjct: 285 KIDGHAAMIVKLKEELTDKERNARSLVEKSREVTMMKEKLE-----DDIAQAVALKIELE 339
Query: 207 PGQARLDXLLKN 242
R +LKN
Sbjct: 340 REHVRGTNVLKN 351
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 158 CCSFTFKFGKVNIDFIC 108
CCS+ K GKVN D C
Sbjct: 418 CCSYDLKLGKVNCDNCC 434
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 158 CCSFTFKFGKVNIDFIC 108
CCS+ K GKVN D C
Sbjct: 418 CCSYDLKLGKVNCDNCC 434
>04_04_1212 -
31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 81 LERAQQNMYTNEVDVYLPKFKCETTTNLKEV 173
L RA Q++ N V+V LPK+ C +N+K++
Sbjct: 791 LSRAVQDLGHN-VEVILPKYDCLNLSNVKDL 820
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,120,773
Number of Sequences: 37544
Number of extensions: 158792
Number of successful extensions: 395
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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