Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M16
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    30   0.21 
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   0.87 
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    26   4.6  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   6.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   6.1  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   8.1  

>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -3

Query: 568 DPILERILCGILFGNCQDRSIPSKPYCSAR-RRAELVPAVRAC--GDSNERLDFCGSLGS 398
           D +L R   GI  G   +R     P C +  R   LV     C  G S +R   CG+ G 
Sbjct: 7   DLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGV 66

Query: 397 SSPHHCQE 374
           S  ++C E
Sbjct: 67  SDCYYCSE 74


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 324 IIERSLTLKDSFLNSTCS*QW*GDDDPKDPQKSNLSLESPQ 446
           ++E SL   DSF++S     W G+       KS+LS  +PQ
Sbjct: 36  LLENSLNSIDSFISSKEEISWCGNQSTPIATKSHLSCINPQ 76


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 459 QRYELAEIPMKDWTSVDL*GRHHLTTVKNT 370
           ++YE+  I   DW+S++L     LT  +NT
Sbjct: 42  RQYEMGNIWNVDWSSMNLESLRKLTNAQNT 71


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 405 KDPQKSNLSLESPQARTAGTNSALLLAEQYGFDGIDLSWQLPKRIPHNIRSSIGSFWHS 581
           K  Q   L L S    TA + +  +  ++       LSW +PK    N +S +   W++
Sbjct: 664 KAAQLDGLGLSSDDLNTAQSENLPIYEQENPLLFDSLSWHVPKDDTRNDKSPLVPTWNA 722


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 421 DFCGSLGSSSPHHCQEHVLLRKLSFKV 341
           D+  SLG+    +C++HV L + S K+
Sbjct: 625 DYVFSLGNPYVEYCKQHVKLEEESLKI 651


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 160 CSHSSMRTILWLLGDAG--WLV 101
           CS+ S+R I WL+G  G  WL+
Sbjct: 74  CSNVSLRLINWLVGVIGLPWLI 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,868
Number of Sequences: 5004
Number of extensions: 43166
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)