Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M16
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       34   0.072
04_03_0649 - 18402976-18403220,18403305-18404499                       34   0.072
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159...    31   0.67 
01_02_0016 - 10199085-10199170,10200649-10201456                       28   6.2  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 450 RTAGTNSALLLAEQYGFDGIDLSWQLP 530
           R A  NS++ LA   GFDG+DL+W+ P
Sbjct: 139 RRAFINSSIELARANGFDGLDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +3

Query: 408 DPQKSNLSLESPQARTAGTNSALLLAEQYGFDGIDLSWQLP 530
           DP  + ++ + P +R A   +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPAFAAMAAD-PASRAAFIGAAVKVARENGFDGLDVAWRFP 170


>08_01_0192 +
           1594530-1594682,1594755-1594955,1595051-1595280,
           1595596-1595766,1595902-1596007,1596339-1596545,
           1596638-1596802
          Length = 410

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 462 TNSALLLAEQYGFDGIDLSWQLPKRIPHNIRSSIGSFW 575
           T   +L+ E + FD   L+W +  R+P  I++++  +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376


>01_02_0016 - 10199085-10199170,10200649-10201456
          Length = 297

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 390 GDDDPKDPQ-KSNLSLESPQARTAGTNSALLLAEQYGFDGIDLSW 521
           GDDDP++PQ  S+ SL     R A   S  + +++Y  +     W
Sbjct: 108 GDDDPRNPQAPSSASLPGTPDRGAPAPSPWMYSKEYASETEAARW 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,368
Number of Sequences: 37544
Number of extensions: 285668
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)