Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M14
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   3.4  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   7.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.9  

>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 351 NQPVELSFSIRAHLRAFCNFIVLYLYRNKYEIALL 455
           +QP  L+  +     AFC+F+++Y     +E  LL
Sbjct: 289 SQPTPLNVCLGNFFNAFCSFVIVYELPLFFETTLL 323


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 54  FTMTGIRQVRNKKLLPDLGKEGELSKEI-VLSTKAKHS 164
           FT+      RN +L P +G+E E+ + I VLS + K++
Sbjct: 167 FTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNN 204


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 240 KMDGKS*VS*RSLAYDENII*IRQAHYVSLL 148
           K+DGK+ VS  S A+D +I+ +R    +SLL
Sbjct: 373 KVDGKAPVSTVSHAHDNSIVALRYNLRISLL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,270
Number of Sequences: 5004
Number of extensions: 41122
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)