Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M14
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical ...    29   3.1  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical
           protein F40A3.5 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 163 VRLSDLDYILIIR*RALGDLAFTVHFWPSYETWWYKGTSIA 285
           +RLS LD+  +IR  A+  L+FTV F P     W  G ++A
Sbjct: 148 LRLSKLDHPNLIRLLAVSQLSFTV-FRPMIALEWLPGGTLA 187


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 375  KKIAPPAGCLLYPGLVCEECTPEFISFTPNGDRRSFIPPRFIGWP 241
            +KI P  G LL  G       P  + + PN       P R + WP
Sbjct: 1676 RKIDPERGKLL-GGRYNSSRAPPHLQYPPNSVNHQIFPGRLLNWP 1719


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,677,592
Number of Sequences: 27780
Number of extensions: 228500
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)