Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_M11
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 112 6e-26
U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical p... 30 0.44
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z78059-2|CAH04726.2| 538|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z81109-2|CAB03244.1| 408|Caenorhabditis elegans Hypothetical pr... 27 4.1
U53154-5|AAC25853.1| 347|Caenorhabditis elegans Hypothetical pr... 27 4.1
AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily a... 27 4.1
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 26 7.2
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 26 7.2
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 26 9.5
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 26 9.5
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 26 9.5
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 112 bits (270), Expect = 6e-26
Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = +2
Query: 107 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADSSKMYVVCGAI 283
MQNDAG+ V+LY PRKCS+SNR+I KDHASVQ+ DVDP TGR S Y +CGAI
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60
Query: 284 RRMGESDDCIVRLTKKDGILAKN 352
RRMGESDD I+RL +KDG++ ++
Sbjct: 61 RRMGESDDAILRLAQKDGLVPRD 83
>U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical
protein F26A1.12 protein.
Length = 231
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 263 TSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCVSV 93
+S + H GPRP P R P +P+ S IH+RR +C+ V
Sbjct: 35 SSGEGRGHHHKHGPRPPRPNRPPRPPPATPPPTTPAPSCPGGWSLIHRRRGPWCIQV 91
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 15 RLVYCK*VIIKCFSSYFIVKLHNCQYYRYTKCRTTLVNSLTCTAQGNARR 164
R V+ + ++I+C + + H C++ R KC T C QGN +
Sbjct: 29 RYVHSQKLVIECTCLHRLPSSHPCRHCRMEKCIAT--GMTMCKVQGNREK 76
>Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical
protein T25E12.4b protein.
Length = 220
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 221 VDPATGRAADSSKMYVVCGAIRRMGESDDCIVRLTKKDG 337
V + G + SS + A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161
>Z78059-2|CAH04726.2| 538|Caenorhabditis elegans Hypothetical
protein C34B4.4 protein.
Length = 538
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 180 WIRRLLAEHFL-GQYKSTNSPASFCILCICNIDNC 79
W ++L F G Y +T SP + + C C NC
Sbjct: 341 WPEKMLRNFFSKGCYNTTMSPEHYYVYCRCEEANC 375
>Z81109-2|CAB03244.1| 408|Caenorhabditis elegans Hypothetical
protein R10D12.2 protein.
Length = 408
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 180 WIRRLLAEHFLGQYKSTNSPASFCILC 100
WI +L L Y TN A C++C
Sbjct: 30 WINLILVSFTLNNYDQTNEVARTCLVC 56
>U53154-5|AAC25853.1| 347|Caenorhabditis elegans Hypothetical
protein C33G8.10 protein.
Length = 347
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 15 RLVYCK*VIIKCFSSYFIVKLHNCQYYRYTKCRTTLVNSLTCTAQGNARR 164
R V+ + + I C + + H C++ R KC T + C QG+ +
Sbjct: 29 RYVHSRKLDISCTCKHRLATSHPCRHCRMLKCMAT--GMVKCKVQGSREK 76
>AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily
assigned gene nameprotein 123 protein.
Length = 655
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -3
Query: 288 LRMAPQTTYILEESAARPVAGSTS-AITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASF 112
+R +P L+E R V + A S D ++R + ++ + N P +F
Sbjct: 90 IRPSPYKVAFLQEEKCRLVCDTKKYARGSADDLAKLRLLQRAMTLNYQHHWIVDNMPVTF 149
Query: 111 CILCICNIDNC 79
C + N+D C
Sbjct: 150 CFKNLQNMDVC 160
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = -3
Query: 276 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 103
PQ+ + S GS S C AW WI+ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = -3
Query: 276 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 103
PQ+ + S GS S C AW WI+ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 192 WSFAWIRRLLAEHFLGQYKS 133
W+ AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 205 LHRC--VVLRMDQTITRRAFPWAV 140
L RC VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 205 LHRC--VVLRMDQTITRRAFPWAV 140
L RC VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,806,133
Number of Sequences: 27780
Number of extensions: 175152
Number of successful extensions: 665
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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