Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M09
         (63 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    23   5.5  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    22   9.6  

>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 8   YIFYMMFVYFIPR 46
           Y+ YM+F Y++P+
Sbjct: 369 YLNYMLFAYYVPQ 381


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 2   SSYIFYMMF 28
           SSYIFYM+F
Sbjct: 200 SSYIFYMLF 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,934
Number of Sequences: 5004
Number of extensions: 1305
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 2
effective length of database: 2,352,470
effective search space used: 42344460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)