Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M07
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.85 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.1  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    28   1.5  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    28   1.5  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.5  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    27   2.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   3.4  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.0  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 498  NGGTYSASDSQSSRY-HSGYNGYS---GQSSTNSGHTYYSSGRSQGYTGQVEN 644
            NG    ++ S +SR  H GY G S   G S+      +YSS R +GY  Q E+
Sbjct: 929  NGNFPRSNASYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRES 981


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 474 NTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYYSSGRS 617
           ++ SS+ S+  + S+S S SS   S  +     SST+S H+  SS  S
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSS 226


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 498 NGGTYSASDSQSSRYHSGYNGYSGQSSTN 584
           N  +Y  SDSQ S +H G N   GQ   N
Sbjct: 264 NKHSYKKSDSQQSFHHKGRNTRKGQRHNN 292



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 468 GYNTQSSALSNGGTYSASDSQSSR-YHSGYNGYSGQSSTNSGHTYYSSGRSQGYTGQVEN 644
           G  T SSA       ++ DS S   +HS  +G++      + H+Y  S   Q +  +  N
Sbjct: 224 GSQTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRN 283

Query: 645 PQE 653
            ++
Sbjct: 284 TRK 286


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 471 YNTQSSALSNGGTYSASDSQSS-RYHSGYNGYSGQSSTNSGHTYYSSGRS 617
           Y  ++  LS    +++  + S     SGY   S  S TNSGHT  ++ RS
Sbjct: 346 YGQETELLSTPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWRS 395


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 483 SSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYYSSGRSQGYTG 632
           SSA S+  + S+S S+S    S  +     SS+ S HT  S+ +S   +G
Sbjct: 525 SSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSG 574


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = -3

Query: 534 SFENHWRCKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRLLGNCDLRGYSDHNYPTRKHL 355
           +++ +W CK  + L +    Y    ++  + + S  K   L    L  + D  +   KH 
Sbjct: 592 AWQEYWHCKIHKLLPKEDASYEQKVVLLTLSLLSKNKHTSLARSLLLSHLDKGWTWNKHS 651

Query: 354 L 352
           L
Sbjct: 652 L 652


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 576 STNSGHTYYSSGRSQGYTGQVENPQELDSTRGVKRYDY 689
           S NS + YYSS      TG  +   +LD+ R V+  D+
Sbjct: 235 SYNSTNNYYSSPTMAPSTGGAKPKSDLDAPRDVRDSDW 272


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
 Frame = +3

Query: 366 GSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSSALSNGGTYSASDSQSSRYH 545
           G G Y+ S  E   F                 +A      +A++N   YS    QSS+  
Sbjct: 63  GGGMYNTS--ENTQFMNTDYSQTSSYASTPMSNAYSRDAPAAINNNFGYSYV-GQSSQPV 119

Query: 546 SGYN---GYSGQSSTNSGHTYYSSGRSQGYTGQVENPQ 650
             YN    Y+  S  N+G      G   GY G V  PQ
Sbjct: 120 PSYNPLPSYNTASLPNAGIPAAMPGMPSGYPGTVPIPQ 157


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 555 NGYSGQSSTNSGHTYYSSGRSQGYTGQVENPQELDSTRGVKRY 683
           N  +GQ+ST++GH   SS     Y     N + + S+     Y
Sbjct: 25  NSSNGQTSTSAGHPSSSSSTLPNYAASSLNSRPVSSSGSGNAY 67


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 513 CKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRL 415
           CK+     + I   +LHE +KK+    H K RL
Sbjct: 649 CKYSNIRKEIIARSNLHENLKKLLAIPHDKLRL 681


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 270 PFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLHPRNFWN 151
           P+ +AL     A +Q     + +E  KS ++ L PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCLFLL-PRNFWN 837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,322
Number of Sequences: 5004
Number of extensions: 49999
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)