Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_M02
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 193 1e-50
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 53 4e-08
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 41 2e-04
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 40 4e-04
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 35 0.010
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.2
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 28 1.2
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 26 3.7
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 26 3.7
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 26 4.8
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 6.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.4
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 6.4
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 25 6.4
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 8.5
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 25 8.5
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.5
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 193 bits (471), Expect = 1e-50
Identities = 91/154 (59%), Positives = 111/154 (72%), Gaps = 2/154 (1%)
Frame = +3
Query: 144 LDEGDIALLKSYGQGQYTKSIKEVEDGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 323
LDEGDI LLKSY G Y + + +++ + V+KR+N+ GIKESDTG +
Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFWDVAADR 86
Query: 324 QTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLADSVAPTDIEEGMRVGV 497
Q + EQPLQVARCTKII + + K Y+IN+KQ AKFVV L + V+PTDIEEGMRVG
Sbjct: 87 QRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGC 146
Query: 498 DRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
DRNKY I +PLPPKIDP+VT+MQVEEKPDVTY D
Sbjct: 147 DRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGD 180
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/65 (36%), Positives = 40/65 (61%)
Frame = +3
Query: 399 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEK 578
K ++ V K+VVD++ + +I+ +RV + + YQ+ LP K+DP V++M VE+
Sbjct: 80 KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKI 139
Query: 579 PDVTY 593
PD TY
Sbjct: 140 PDSTY 144
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 456 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
V P ++ G +GV+++ Y I LP + D V M+V+EKP YSD
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSD 186
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +3
Query: 399 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEK 578
++I+ ++VV ++V + + +G+RV +D I LP ++DP V M +E+
Sbjct: 67 RFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDP 126
Query: 579 PDVTYS 596
D++++
Sbjct: 127 GDISFA 132
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 34.7 bits (76), Expect = 0.010
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = +3
Query: 426 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
+ +VV + ++ ++ V + R+ + LPP+ D ++++++ +E+PDV+Y+D
Sbjct: 78 SNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYAD 135
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 493 PTLIPSSISVGATESARSTTNLANCLTFIMYLGS 392
PT +PSS+S + S+ TT L T + Y G+
Sbjct: 302 PTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGT 335
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 493 PTLIPSSISVGATESARSTTNLANCLTFIMYLGS 392
PT +PSS+S + ++ TT L T I Y G+
Sbjct: 356 PTSVPSSVSSFTSSNSSYTTTLTASNTSITYTGT 389
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 295 GGANPVSD-SFIPVSSFTLFITVCIPSSTSLMLFVY 191
G +N V D +F+P S TL + C P+ST L +++
Sbjct: 381 GVSNTVKDLAFLPQSLTTLIVKPCNPASTILCPYLF 416
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 323 FVRSKIPQSWWCQPSIRFLYSCKFI 249
F +S+I Q W+ + IRFL + F+
Sbjct: 140 FSQSRIHQKWYLRKQIRFLPTTSFV 164
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 146 RRRRYCTFEILWPRPIHKEHQRGRRW 223
RR Y F I W +P H H + W
Sbjct: 102 RREEYDRFGIHWNQPSHPTHPSPQNW 127
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 535 GGNGM*IWYLLRSTPTLIPSSISVGATESARSTT 434
GG GM +W + LIP SIS+G S+ T+
Sbjct: 78 GGGGM-VWSWIIGCICLIPVSISLGELASSMPTS 110
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 140 ISRRRRYCTFEILWPRPIHKEHQRGRRWYTD 232
+S + YCT + W IHK Q RW+ +
Sbjct: 442 LSLQEEYCTLKRKWYEDIHK--QFNDRWFIE 470
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 7 ICSLFHYNFVEVVYLL*QQKICRITWEVI 93
IC F++ F L QQK RI WEV+
Sbjct: 2308 ICPYFNHEFSNEQLL--QQKFIRIHWEVL 2334
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 418 LTFIMYLGSLESALMIFVHLATCKGCSFC 332
L I + SLE+ ++HLA K +FC
Sbjct: 312 LVCIFDIDSLENKKFYWIHLAAVKALAFC 340
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 192 YTKSIKEVEDGIQTVMKRVNELTGIKE 272
+TKS+ ++D + KR+N L+ K+
Sbjct: 33 FTKSLAVLDDNVSEFRKRMNHLSATKQ 59
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 521 VNLVFITVNPNSHSFFNISGSH 456
+NL IT++P++ +F I G+H
Sbjct: 196 INLYTITMSPSNPYYFAIGGTH 217
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 19 FHYNFVEVVYLL*QQKICRITWEVICV 99
FHY V L +Q+I +TW C+
Sbjct: 302 FHYGIVYAFLKLREQEIRNLTWIAECI 328
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 496 TPTLIPSSISVGATESARSTTNLANCL 416
TP+L S+ S G+T+S S +N+AN L
Sbjct: 268 TPSLAASTASTGSTDS--SGSNIANTL 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,656
Number of Sequences: 5004
Number of extensions: 47630
Number of successful extensions: 150
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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