Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_M02
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 215 2e-56
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 215 2e-56
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 58 5e-09
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 55 5e-08
06_01_0511 + 3688788-3688880,3689050-3689166,3689959-3690066,369... 39 0.004
02_05_1126 - 34284733-34284810,34285151-34285291,34285424-342855... 39 0.004
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 35 0.043
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 33 0.13
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602... 33 0.17
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553... 33 0.23
03_02_0947 + 12640438-12640824 31 0.53
04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051 28 6.6
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 215 bits (526), Expect = 2e-56
Identities = 103/152 (67%), Positives = 121/152 (79%)
Frame = +3
Query: 144 LDEGDIALLKSYGQGQYTKSIKEVEDGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 323
LDE DIALLK+YG G Y+ SIK+VE I+ + K++N+L GIKESDTG K
Sbjct: 18 LDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDK 77
Query: 324 QTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDR 503
Q +Q EQPLQVARCTKII+ +++D KY+INVKQ AKFVV L D V+PTDIEEGMRVGVDR
Sbjct: 78 QMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137
Query: 504 NKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
NKYQI IPLPPKIDP+VT+M VEEKPDVTY+D
Sbjct: 138 NKYQIQIPLPPKIDPSVTMMTVEEKPDVTYND 169
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 215 bits (526), Expect = 2e-56
Identities = 103/152 (67%), Positives = 121/152 (79%)
Frame = +3
Query: 144 LDEGDIALLKSYGQGQYTKSIKEVEDGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 323
LDE DIALLK+YG G Y+ SIK+VE I+ + K++N+L GIKESDTG K
Sbjct: 18 LDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDK 77
Query: 324 QTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDR 503
Q +Q EQPLQVARCTKII+ +++D KY+INVKQ AKFVV L D V+PTDIEEGMRVGVDR
Sbjct: 78 QMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137
Query: 504 NKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
NKYQI IPLPPKIDP+VT+M VEEKPDVTY+D
Sbjct: 138 NKYQIQIPLPPKIDPSVTMMTVEEKPDVTYND 169
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 58.0 bits (134), Expect = 5e-09
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +3
Query: 399 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEK 578
K ++ V K+VVD+ S+ T I RV + + Y +H+ LP K+DP V +M+VE+
Sbjct: 101 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMKVEKV 160
Query: 579 PDVTY 593
PD TY
Sbjct: 161 PDSTY 165
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +3
Query: 405 IINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPD 584
I+ V K+VVD+ S+ T + RV + + Y +H+ LP K+DP V +M+VE+ PD
Sbjct: 125 ILLVHPEGKYVVDVDKSIDITKLSPSTRVALRNDSYMLHLILPSKVDPLVNLMKVEKVPD 184
Query: 585 VTY 593
TY
Sbjct: 185 STY 187
>06_01_0511 +
3688788-3688880,3689050-3689166,3689959-3690066,
3690634-3690825,3691010-3691201,3691484-3691602,
3691740-3691827,3692155-3692274,3692378-3692518,
3693065-3693142
Length = 415
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 456 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
V P ++ G VGV+++ Y I LP + D V M+V+EKP Y+D
Sbjct: 116 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYND 163
>02_05_1126 -
34284733-34284810,34285151-34285291,34285424-34285543,
34285787-34285874,34285962-34286080,34286437-34286628,
34286802-34286993,34287309-34287416,34287983-34288099,
34288214-34288315
Length = 418
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 456 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
V P ++ G VGV+++ Y I LP + D V M+V+EKP Y+D
Sbjct: 119 VDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYND 166
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 390 NDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQV 569
++ ++I+ ++VV V + G RV +D I LP ++DP V M
Sbjct: 72 DNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPREVDPVVYNMLH 131
Query: 570 EEKPDVTYS 596
E+ +V+YS
Sbjct: 132 EDPGNVSYS 140
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 399 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEK 578
++I+ ++VV V + G RV +D I LP ++DP V M E+
Sbjct: 76 RFIVKASSGPRYVVGCRSKVDKEKLIAGTRVVLDMTTLTIMRTLPREVDPVVYNMLHEDP 135
Query: 579 PDVTYS 596
+V+YS
Sbjct: 136 GNVSYS 141
>02_02_0700 +
13058446-13058790,13059352-13059582,13060083-13060241,
13060483-13060635,13061619-13061702,13061847-13061915,
13062374-13062421,13062487-13062621
Length = 407
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/85 (20%), Positives = 44/85 (51%)
Frame = +3
Query: 345 PLQVARCTKIINADSNDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHI 524
PL + + ++++ ++ I+ + + V + ++ ++ V + R+ +
Sbjct: 36 PLVIGQFMEMVDGNNG----IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVD 91
Query: 525 PLPPKIDPTVTIMQVEEKPDVTYSD 599
LPP+ D +++++ EKP+VTY+D
Sbjct: 92 VLPPEADSSISLLGSSEKPNVTYTD 116
>11_04_0057 -
12953479-12954364,12954484-12955034,12955125-12955342,
12957514-12957678,12960562-12960898
Length = 718
Score = 32.7 bits (71), Expect = 0.23
Identities = 26/80 (32%), Positives = 35/80 (43%)
Frame = -3
Query: 451 SARSTTNLANCLTFIMYLGSLESALMIFVHLATCKGCSFCNVCLSAARSHKAGGANPVSD 272
SA T NL LT +LG+ SA++IFV+ A C +S A +
Sbjct: 177 SASVTANLIIYLTTKYHLGAASSAIIIFVYQAAANFLPVCGAIVSDALLGRYLMVTLTLF 236
Query: 271 SFIPVSSFTLFITVCIPSST 212
S +F LF+T IP T
Sbjct: 237 S-CTTGTFMLFLTSLIPKLT 255
>03_02_0947 + 12640438-12640824
Length = 128
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 400 LGSLE-SALMIFVHLATCKGCSF--CNVCLSAARSHKAGGANP 281
LG L+ SAL +FVH+A C+ + C VCL R + G P
Sbjct: 20 LGELDISALPVFVHVAGCEAAAAVECAVCLGEVRDGERGRLLP 62
>04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051
Length = 312
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 277 ILGWHHQLCGILLRTNRHYKMSNLYRWRDVRKSLMQ 384
+ W + CG+ +R R + M+ RWR K+ Q
Sbjct: 61 VQSWRGRGCGVAVRRQRRHGMAVRRRWRSCAKAEAQ 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,371,362
Number of Sequences: 37544
Number of extensions: 299973
Number of successful extensions: 803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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