Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_M02
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical pr...   247   4e-66
AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical ...    55   3e-08
AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical ...    55   3e-08
Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical pr...    55   4e-08
AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome re...    43   1e-04
AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome re...    43   1e-04
AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome re...    42   3e-04
AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome re...    34   0.089
U12965-4|AAA20608.1|  414|Caenorhabditis elegans Proteasome regu...    33   0.21 
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF047651-6|AAC02725.3|  426|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical
           protein C52E4.4 protein.
          Length = 435

 Score =  247 bits (605), Expect = 4e-66
 Identities = 118/178 (66%), Positives = 136/178 (76%), Gaps = 1/178 (0%)
 Frame = +3

Query: 69  MPDHLGGDMRXXXXXXXXXXXXXX-SLDEGDIALLKSYGQGQYTKSIKEVEDGIQTVMKR 245
           MPDHLG DMR               +LDEGDIA+LK YGQG Y + +K ++  I+  +K+
Sbjct: 1   MPDHLGDDMRKTKKDDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKK 60

Query: 246 VNELTGIKESDTGXXXXXXXXXXXXKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQF 425
           VNEL+G+KESDTG            KQ +Q EQPLQVARCTKII +D +DP+Y+INVKQF
Sbjct: 61  VNELSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQF 120

Query: 426 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
           AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIH+PLP KIDPTVT+MQVEEKPDVTYSD
Sbjct: 121 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSD 178


>AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical
           protein F56F11.4a protein.
          Length = 411

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/65 (40%), Positives = 39/65 (60%)
 Frame = +3

Query: 399 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEK 578
           K ++      K++VD+A SV  + +  G RV +  + Y IH  LP K+DP V++M VE+ 
Sbjct: 89  KVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKV 148

Query: 579 PDVTY 593
           PD TY
Sbjct: 149 PDSTY 153


>AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical
           protein F56F11.4b protein.
          Length = 432

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/65 (40%), Positives = 39/65 (60%)
 Frame = +3

Query: 399 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEK 578
           K ++      K++VD+A SV  + +  G RV +  + Y IH  LP K+DP V++M VE+ 
Sbjct: 110 KVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKV 169

Query: 579 PDVTY 593
           PD TY
Sbjct: 170 PDSTY 174


>Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical
           protein Y49E10.1 protein.
          Length = 416

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%)
 Frame = +3

Query: 399 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEK 578
           K ++ V    K+VVD+  S+    +  G RV +  + Y +H  LP K+DP V++M VE+ 
Sbjct: 94  KVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKV 153

Query: 579 PDVTY 593
           PD TY
Sbjct: 154 PDSTY 158


>AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform b
           protein.
          Length = 398

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = +3

Query: 390 NDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQV 569
           ++ K+I+      ++VV    S+   ++++G RV +D     I   LP ++DP V  M  
Sbjct: 74  SEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSH 133

Query: 570 EEKPDVTYSD 599
           E+  +++YSD
Sbjct: 134 EDPGNISYSD 143


>AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform a
           protein.
          Length = 406

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = +3

Query: 390 NDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQV 569
           ++ K+I+      ++VV    S+   ++++G RV +D     I   LP ++DP V  M  
Sbjct: 82  SEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSH 141

Query: 570 EEKPDVTYSD 599
           E+  +++YSD
Sbjct: 142 EDPGNISYSD 151


>AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 5 protein.
          Length = 430

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +3

Query: 405 IINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPD 584
           +I     A + + +   V P +++ G  VGV+++ Y I   LP + D  V  M+V+E+P 
Sbjct: 114 VIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPT 173

Query: 585 VTYSD 599
             YSD
Sbjct: 174 EQYSD 178


>AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 2 protein.
          Length = 443

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 21/85 (24%), Positives = 41/85 (48%)
 Frame = +3

Query: 345 PLQVARCTKIINADSNDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHI 524
           P+ V    +II+    D   I++    ++  V++   V    +E G  V ++   + +  
Sbjct: 109 PMAVGSLEEIID----DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIG 164

Query: 525 PLPPKIDPTVTIMQVEEKPDVTYSD 599
            L    DP V++M++E+ P  TY+D
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYAD 189


>U12965-4|AAA20608.1|  414|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 3 protein.
          Length = 414

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 471 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTIMQVEEKPDVTYSD 599
           ++ G  V + +    +   LPP+ D ++ +++ +EKPD++Y D
Sbjct: 120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGD 162


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/71 (21%), Positives = 31/71 (43%)
 Frame = -3

Query: 400 LGSLESALMIFVHLATCKGCSFCNVCLSAARSHKAGGANPVSDSFIPVSSFTLFITVCIP 221
           +G+L +A       A C G S C++C SA    K      +  + + +S+  + + + +P
Sbjct: 1   MGALLAAPFCAASAACCFGSSACSLCCSACPGAKNSTTTRIMYALMLISATFMAVVMLLP 60

Query: 220 SSTSLMLFVYW 188
                ++   W
Sbjct: 61  GVQKKLVENKW 71


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 269 LYSCKFIYPFHHSLYTIFDLFDALCVLALAIGFQKCNISFV 147
           L+ C FI+     ++T   +F  LCVL     F   +IS V
Sbjct: 25  LFKCSFIFLIQFVIFTYIHIFSYLCVLFNYFLFIDLSISTV 65


>AF047651-6|AAC02725.3|  426|Caenorhabditis elegans Hypothetical
           protein C05D2.8 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 289 HHQLCGILLRTNRHYKMSNLYRWRDVRKSLMQI 387
           +H   GI + + R + ++   RW D+R+ +M I
Sbjct: 275 NHTASGIRMTSMRDHTIAGYRRWSDIRRYIMMI 307


>AF016426-1|AAB65347.2|  254|Caenorhabditis elegans Hypothetical
           protein W07B8.3 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 150 EGDIALLKSYGQGQYTKSIKEVEDGIQTVMKRVNELTGIKE 272
           EGD+A +  YG+     S K+V + IQ    ++   T +++
Sbjct: 47  EGDLAFIDQYGRQVIVSSDKDVREAIQQSKNKLKLHTTLRD 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,532
Number of Sequences: 27780
Number of extensions: 270761
Number of successful extensions: 869
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)