Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L22
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.8  
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    25   7.7  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   7.7  

>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 497 GAGVDYMFKDKIGASATAAHTDVFDRNDYSLGG 595
           G+G   +F DK G    A     FD+ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 15  TQRCSPSYSSCQFFWSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGKRVLSLSTLTA 194
           TQR  PSY   +     +T GT S+    N+S+N     + G  P +   ++ S  T   
Sbjct: 26  TQRVRPSYELIEAPTRQATNGTGSVSGSPNSSSN-STPANQGSLPSHTNPQLYSSITRKE 84

Query: 195 PQVLWSRY 218
              L+  Y
Sbjct: 85  RPELFRSY 92


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +2

Query: 146  SRVRRQAGALTINSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD-- 319
            S + +++G + +  +GT G    +   G    + S    +++ + + + AA   +  +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 320  -NVNGHGATLTKTHIPGFGDKMTAAGKV 400
              +  HG T+   HI   GD MT  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 371 GDKMTAAGKVNLFHNDNHDFSAKAFATKNMPNIPQVPNFNTVGAG 505
           G  +    KVN+F  D  DF+A     K M   P +P   TV AG
Sbjct: 64  GSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDP-MPARTTVAAG 107


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 193 HLRCYGQGTYNWKRKSQAQCSWLR 264
           HL  YG+ TYN    +  Q SW +
Sbjct: 176 HLEVYGRTTYNIVLHNSWQASWFK 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,493
Number of Sequences: 5004
Number of extensions: 60949
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)