Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L22
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818           30   1.5  
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    30   2.0  
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420...    28   6.0  
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774...    28   6.0  
08_02_1583 + 28036125-28037030,28037411-28037656                       28   7.9  

>07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818
          Length = 201

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 39  SSCQFFWSASTAGTCSLKSLVNTSNNMRISRSSGPTPGYAGK 164
           + C FF SA+T G CS K         R   SS P PG A K
Sbjct: 19  AGCGFFGSAATGGLCS-KCYKEQQPQPRHHISSAPPPGTATK 59


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 523 LEHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 407
           LE + HSG  + +V  L N W+++    F  + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>12_02_0244 -
           16241243-16241279,16241781-16241848,16241930-16242032,
           16242095-16242256,16242305-16242369,16242547-16242612,
           16242738-16242829,16243029-16243134,16243231-16243279,
           16243387-16243540,16243661-16243687,16243797-16243959,
           16244621-16244701
          Length = 390

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 541 RCTNLVLEHVVHSGTDSVEVRN--LRNIWHVFSGECF 437
           R  NLV+++V HSG + +++    LRN+   FS  CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390


>03_04_0112 -
           17375871-17376099,17377021-17377054,17377237-17377470,
           17377636-17377705
          Length = 188

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 9   ANTQRCSPSYSSCQFFWSASTAGTCSLKSLVNT 107
           A      PS+S C F  SAS AGT  L   V T
Sbjct: 94  ATLSSSDPSFSGCTFPSSASAAGTTGLSPGVGT 126


>08_02_1583 + 28036125-28037030,28037411-28037656
          Length = 383

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 167 PLAGVPWSWPTAPAD 123
           PLA V  SWPT+PAD
Sbjct: 179 PLAAVVESWPTSPAD 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,841,509
Number of Sequences: 37544
Number of extensions: 438839
Number of successful extensions: 1058
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)