Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L21
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   1.6  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   3.7  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    26   4.8  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   6.4  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   8.5  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 16  RYARSLSTPN--KYHGGSHTISKSSQSTGPTHPGYNRRH 126
           +Y +S  T    K H GS+ + +   S    HPG  R H
Sbjct: 862 QYRKSCETQRSRKSHEGSNDLERQPSSPDTVHPGIKRSH 900


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 163 HDAYCYANRNYVHDVCCNLDESVLCFDCF*I*YDYLHGICLEYSNCE 23
           HD +C+ + +Y HD+   LD  +L  D   + + Y      E S  E
Sbjct: 231 HD-HCHVSSDYTHDIAHALDRDILERDEIVLQFPYTEAAAQEKSQEE 276


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 423 IKIQTVIYENYIIYVIDYSNFALYVVHNKNN*DKIKFTQI 304
           +K+ T  Y  +++Y++    F +Y+V        +KF +I
Sbjct: 2   VKVPTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEI 41


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 137 SIRVAVSIMVEALRRLVVARTPAKLIQ 217
           ++RVA S+ V  + R   ARTP++L Q
Sbjct: 316 TVRVASSLAVRPVSRNAQARTPSRLEQ 342


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 33  EYSKQIPWR*SYYI*KQSKHRTDSSRLQ 116
           +Y   + WR +Y I +++KH T+S   Q
Sbjct: 284 KYISYLKWRKAYLIIQENKHLTESGLSQ 311


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   LNPNTRYARSLSTPNKYHGGSHTISKS 81
           L P+  Y   + +PNK    SHT SK+
Sbjct: 454 LTPSKNYPSKIYSPNKNLDFSHTASKA 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,440
Number of Sequences: 5004
Number of extensions: 37700
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)