Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L20
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0707 - 6133561-6133947                                           29   2.1  
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    27   4.8  
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931...    27   6.3  
07_01_1106 - 10187609-10190041,10190292-10191932                       27   6.3  
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142...    27   8.3  

>12_01_0707 - 6133561-6133947
          Length = 128

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 125 WNLRCYGQCTDNWKRKSQAQCSW 193
           W+ RC G C  +W  +   Q SW
Sbjct: 64  WSRRCGGGCAASWVARPAVQASW 86


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 148 LTIAPEV-PSELIVSSPACRRTMELVHCSGCSSYC 47
           + IA +V P EL+V  PA  R ME+VH    S  C
Sbjct: 131 VVIAHDVDPIELVVWLPALCRKMEIVHKKTASVLC 165


>10_06_0154 -
           11291630-11292106,11292192-11292457,11293027-11293131,
           11293210-11293234,11293349-11293465,11293528-11294041,
           11295524-11295578,11295980-11296060,11296129-11296219,
           11296321-11296417,11297465-11297529,11297950-11298108,
           11298208-11298455,11300667-11300835
          Length = 822

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 15  CWLKSLNNYIEQYEEQPEQWTSSMVRRQAGELTINSDGTS 134
           C L+ LNNY+E   E+P   + + VR  +    ++ + TS
Sbjct: 319 CALRCLNNYLELMIEEPRFSSIAYVRLDSQVKKLDKENTS 358


>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 405 KWWAYFWSRTPSRINNGRCYE 343
           +WW Y W  T   + + RC++
Sbjct: 533 RWWKYNWVHTQCNLKSYRCHQ 553


>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
            20714296-20714556,20715222-20715393,20715501-20715662,
            20716435-20716863,20717729-20717785,20717872-20718842,
            20719098-20719182,20719269-20719637,20719756-20720001,
            20720090-20720362,20720663-20720827,20721328-20721556,
            20721727-20722168,20723152-20724138,20724352-20724517,
            20725070-20725728,20725820-20726186
          Length = 2113

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 285  NTHIPGIGDKLSVAGKVNLFHNNDHYLSA 371
            NT + G GDK  V G +N FH + ++LSA
Sbjct: 1196 NTSLDG-GDKKIVYGILNPFHASSNWLSA 1223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,473
Number of Sequences: 37544
Number of extensions: 262590
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)