Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L19
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.46 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   4.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.4  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.4  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   7.4  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   7.4  
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|...    24   9.8  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -3

Query: 231 SNL*THLRXMGNHCHNSENTRERDV--QSTRRSHLSVFYFLLQSRSVNKLTRNSN 73
           SN+  + R + N+ +NSENT++  V  + ++   LS F F + S  V+ L  +S+
Sbjct: 210 SNMEDYTRAVMNYINNSENTQQASVSPEESQLVMLSRFVFSVASGWVSVLMNSSS 264


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 197  LPIXLRCVYKFDK*ETKHMESWPELXRRIHPFAHIKILMGALKDD 331
            LP  +R    F   + +HMES  +  RRI P + +++L   L+D+
Sbjct: 2275 LPEEMREEVVFQHIQERHMESISDSSRRIDP-SFLEVLPSDLRDE 2318


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 144 RSHLSVFYFLLQSRSVNKL 88
           +SHL+ +YF L++RS+N +
Sbjct: 261 QSHLNSYYFSLRTRSLNNV 279


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 263 ASFPCVLFLIYQIYK 219
           A FP ++FL++Q YK
Sbjct: 243 AEFPIIVFLLFQTYK 257


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 129 LKDGSFVCSVRRARVYSRCCGSDCPSXSDAFINLINKKQNTW 254
           +K+G F+C  R+A++  R  G+  P      ++ I+  Q  W
Sbjct: 74  MKEGVFLCVARKAKLVLR-IGNRDPISKLENVSFISLDQELW 114


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 189 HNSENTRERDVQSTRRSHLSVFYFLLQSRSVNK 91
           HNS  T+E   ++    H S F  LL+S +V K
Sbjct: 305 HNSLQTKEFVAKNLTGGHASCFSVLLKSDTVAK 337


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 370 LSIVSHFRQLQYIIVFQCSH*YFDVCKRVYASGKFR 263
           LS++SH   + Y+ V   S+ Y D+C +V    +FR
Sbjct: 494 LSLISH---INYVSVTDISNCYGDLCMKVAHFPQFR 526


>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 320 LKDDNILKLPKVTHDAELIANLPENFDPRDKWPECPTL 433
           LK+     L  V  +  L      + DPR K P CPT+
Sbjct: 5   LKESLESTLANVAKNETLFVAYLASVDPRTKQPWCPTV 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,499
Number of Sequences: 5004
Number of extensions: 33300
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)