Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L16
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    29   0.58 
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.4  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.5  

>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 372 RKKESFVFISGKNVHKSELEKKSRRNQKLKKN--PRRMVVG 488
           ++K   VF+    + K    KK R+N+K KKN  P    VG
Sbjct: 18  KEKSETVFLDEAAITKPPASKKKRKNRKKKKNNGPSEQFVG 58


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 143 LIIDKRTIYTKRY*YIAYITPNYASKSSENRKI 241
           L +D+RT Y K Y  I Y T   A K+ + + +
Sbjct: 41  LNLDRRTGYVKGYALIEYATLEQAQKAVDEKNL 73


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
 Frame = +2

Query: 173 KRY*YIAYITPNY-ASKSSENRKIFFNRYIITSWFPRLR------LHFICSLAASEKVHI 331
           KRY YI+Y+ PN+  +K++  R ++ +  ++ ++ P         + ++C    SE + I
Sbjct: 152 KRYPYISYL-PNWLLAKNNAERLVYKSHLLLNAYSPPKSASASSVIVWVCGAKKSESIII 210

Query: 332 TFHSYL 349
            + S L
Sbjct: 211 PYLSSL 216


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 237 FLFSLDFEA*FGVIYAIY*YRFV*IVR 157
           +L SLD+   F ++YA+Y   F+  +R
Sbjct: 333 YLESLDYSQLFSILYALYPINFLEFLR 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,862
Number of Sequences: 5004
Number of extensions: 36927
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)