Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L16
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical...    29   2.8  
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical...    29   2.8  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical
           protein K07E3.2 protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 378 KESFVFISGKNVHKSELEKKSRR 446
           K +F F+SG   HKS++EK +R+
Sbjct: 206 KRAFQFVSGSAFHKSDVEKVTRK 228


>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y105C5B.21b protein.
          Length = 1084

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 405 KNVHKSELEKKSRRNQKLK-KNPRRMVVGPS 494
           K+V   + EKK +  +K K KNP+ +V GPS
Sbjct: 763 KHVASPKPEKKKKDKEKKKDKNPKNIVTGPS 793


>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
            protein Y105C5B.21a protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 405  KNVHKSELEKKSRRNQKLK-KNPRRMVVGPS 494
            K+V   + EKK +  +K K KNP+ +V GPS
Sbjct: 933  KHVASPKPEKKKKDKEKKKDKNPKNIVTGPS 963


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 203 PNYASKSSENRKIFFNRYIITSWF 274
           P++  +S++   IFFN  +IT WF
Sbjct: 218 PSFLRRSAQLLHIFFNSVVITLWF 241


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 236 KIFFNRYIITSWFPRLRLHFICSLAASEKVHITFHSYLT 352
           K FF R   +S   +L+LH + SL +   VHI      T
Sbjct: 316 KSFFVRSCDSSLVKKLKLHVLTSLVSEANVHIILRELQT 354


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 236 KIFFNRYIITSWFPRLRLHFICSLAASEKVHITFHSYLT 352
           K FF R   +S   +L+LH + SL +   VHI      T
Sbjct: 326 KSFFVRSCDSSLVKKLKLHVLTSLVSEANVHIILRELQT 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,552
Number of Sequences: 27780
Number of extensions: 198377
Number of successful extensions: 408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)