Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L14
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    30   0.34 
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    28   1.4  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    28   1.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    27   1.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    27   3.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   5.6  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   7.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   9.8  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.8  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   9.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.8  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   9.8  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   9.8  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   9.8  

>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 506 NEEDWTLLSKKAEAAGADALELNLSCPHGMGESG 607
           N+ +  L + K  A   DA+++NL CP G+ + G
Sbjct: 84  NDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKG 117


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 155 DEIDLSVEVCGIKFENPFGLAS 220
           D+  L+VEV G KF NP GLA+
Sbjct: 101 DDPSLAVEVWGKKFCNPIGLAA 122


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
 Frame = +2

Query: 341 VRGVTSGENYGPGQGSFLNI-ELISEKCEAYWCQSVTELKK-DFPNKVIIASIMC----- 499
           ++G+T G++  PG  + +NI   IS+   +   Q+       +F  KV  A I C     
Sbjct: 258 IKGITYGDSNRPGINNLINIFAAISDSTPSDIAQANASCSNAEFKEKVSSAIIRCLQPIS 317

Query: 500 -SYNE--EDWTLLSKKAEAAGADALELNLSCPH 589
            S+NE  ++  LL   A+    +A+    SC H
Sbjct: 318 TSFNEWRQNRELLRDIAKKGAEEAVAEASSCMH 350


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/87 (24%), Positives = 40/87 (45%)
 Frame = -1

Query: 264 SNPLRIMAELVVGGALANPNGFSNFIPHTSTDRSISSIGEWNFGSSIGESNEMPCK*QCM 85
           S+P    +  +   +L+  +  S     +ST  S+SS    +  SS   S+ +       
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISS---S 276

Query: 84  YQAADLPSFTDSTVVSATPAKSPPTNT 4
             ++  P+ T ST+ S++ + S PT+T
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSSSPTST 303


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 88  HVPGSGFAVVYRFDCRLGDSS*IA 17
           HVPGSG A V R  C L +++ IA
Sbjct: 366 HVPGSGIAKVNRAVCMLSNTTSIA 389


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
 Frame = -1

Query: 363 SPDVTPRTIRGDTLVTISLSRENVLVTANPQPCSNPLRIMAELV--VGGALANPNGFSNF 190
           +P V P +    ++     S  +    +NP P ++     +  +   GG+ +     +  
Sbjct: 135 TPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPT 194

Query: 189 IPHTSTDRSISSIGEWNFGSSIGESNEMPCK*QCMYQAADLPSFTDSTVVSATPAKSPPT 10
           +P TST  +   I   +  S+   S+ +P        +  +P+   S++ +      PPT
Sbjct: 195 VPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPT 254

Query: 9   NT 4
           +T
Sbjct: 255 ST 256


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 FEQGWGFAVTKTFSLDKDMVTNVSPRIVRGVTSG 361
           +EQGWG  ++       D V +VS R +R   +G
Sbjct: 219 YEQGWGKKMSYCLGFGIDSVRDVSHRYIRHPENG 252


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 236  SSAMIRRGFEQGWGFAVTKTFSLDKDMVTNVSPRIVRGVTS 358
            ++A+  +GFE  +G + +    L+KD + +VS  I   V+S
Sbjct: 952  NNALNEKGFENQFGLSSSAAKVLNKDTLDHVSGPISNSVSS 992


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/93 (20%), Positives = 36/93 (38%)
 Frame = +2

Query: 56  VNDGKSAAWYMHCYLQGISFDSPIELPKFHSPIDEIDLSVEVCGIKFENPFGLASAPPTT 235
           + D   A +   C   GI   + +E     S ++    S  + G++   P G   A  + 
Sbjct: 75  LRDTSIAEYIQQCSELGIQNLTFLERTDLISWLEGSSDSEHIIGLEKPKPEGSTDAATSM 134

Query: 236 SSAMIRRGFEQGWGFAVTKTFSLDKDMVTNVSP 334
              + ++  E  W F  T+T S    ++  + P
Sbjct: 135 DVDLHKKSEEVNWLFENTRTVSNHNSVLHGIKP 167


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 395 NIELISEKCEAYWCQSVTELKKDFPNKVIIASIMCSYNEEDWTLLS 532
           N  L+SE+C+AY      EL      K+  A   CS++E +  LLS
Sbjct: 252 NAVLLSERCKAY-----IELSGKAQIKITTAFGNCSFDEIERKLLS 292


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 17  GDLAGVAETTVESVNDGK 70
           GD+A V + T+ES+ DG+
Sbjct: 726 GDVAAVTKQTIESLKDGE 743


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 198 SNFIPHTSTDRSISSIGEWNFGSSIGESN 112
           SN +P TS   SI S  ++ FG  IG+ +
Sbjct: 36  SNVVPGTSHIGSIKSPADYVFGDIIGDGS 64


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +2

Query: 398  IELISEKCEAYWCQSVTELKKDFPNKVIIASIMCSYNEEDWT 523
            ++ I + C A W  +VT +      K ++        EE W+
Sbjct: 1782 VKTIQQHCSADWYDNVTNIVHKSRKKKLVLPSQVEQEEEYWS 1823


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 300 ENVLVTANPQPCSNPLRIMAELVVGGALANPNGFSNFI 187
           ENV+V   P P    L +    VV G   N    S+++
Sbjct: 420 ENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYV 457


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 629 LVHRLGPFQIPPCRAGTTDLVLKHPHQL 546
           L+  + PF +PP +  + D+++    QL
Sbjct: 36  LISTVAPFDVPPFKVESLDVLISQSEQL 63


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -1

Query: 522 VQSSSLYEHIIEAIITLLGKSFFSSVTL 439
           +   +L+E+++ A+ T LGK+F ++V +
Sbjct: 80  IVQKALFENVLVALPTGLGKTFIAAVVM 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,120
Number of Sequences: 5004
Number of extensions: 63604
Number of successful extensions: 204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)