Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_L12
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 31 0.42
09_06_0216 + 21627238-21627834 28 3.9
08_01_0422 + 3737429-3738006,3738083-3738824 28 3.9
10_01_0039 + 447573-448911,451247-451296,451322-451423 28 5.2
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 28 5.2
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 28 5.2
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 5.2
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 5.2
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 27 6.8
08_02_0141 - 13112399-13112514,13112898-13112994,13113113-13113430 27 6.8
06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890 27 6.8
06_03_0339 - 19687749-19690805 27 9.0
05_05_0299 - 23930657-23932627 27 9.0
04_04_0144 - 23095172-23095830,23095915-23097265 27 9.0
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487... 27 9.0
02_04_0217 + 20992238-20992397,20992488-20992792,20992910-209930... 27 9.0
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 273 FLRPQASDEGQYQCFAETPAGVASSRVIS 359
FLRP A+D Y CF GVAS ++I+
Sbjct: 274 FLRPNAADLSDYGCFVVLALGVASLQMIA 302
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 161 SHRRKRSGSQVLLAKGWEIFQLAG 232
SH RKR+ +Q +LAK ++F AG
Sbjct: 108 SHYRKRAAAQDVLAKAQDVFNQAG 131
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 195 SWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCF--AETP 329
SWQ G+ W++ A R+D V LR + +GQ C AETP
Sbjct: 282 SWQPWGRLEAWRDQGGAARQD---TVCLRLRLLPDGQDACMLVAETP 325
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 437 QLERPAFDWRFLVCLRWRCDEVSLPEADHPR 345
+L R D++ L WRC +LP A H R
Sbjct: 264 RLGRRCTDFQLLAATLWRCRTAALPYAPHRR 294
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 342 SSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNAYPKTLITWKKRLSGADPY 512
+S+++S +KT +PA KT I GR L + PN +L+ W L A Y
Sbjct: 197 TSQLLSAKKT----NPAAHSSKTEIGGRNAILKLLSPNLIRSSLLLWTVFLGHAFLY 249
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 235 CSCQLKDFPSFCQEYLTP*SFPSMRHSRTVGLF 137
C+C++ F ++C + + P + + HS LF
Sbjct: 390 CACEIAMFDTYCSKQMLPMRYGKIDHSSNTTLF 422
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 262 PSSLRRAALCSCQLKDFPSFCQ 197
P SLRR ++ +C+ DFP++ Q
Sbjct: 911 PPSLRRLSIVNCRKLDFPAYLQ 932
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 48 LSACIIVGSALPVDKYPVLKD 110
L AC + G+ LP+D++ KD
Sbjct: 605 LGACALAGTGLPIDRFKTAKD 625
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 210 GKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFAETP 329
GK++ W + + DEG ++F P +E Y AE P
Sbjct: 178 GKNWVWARNTDQV-SDEGDILFETPDIEEEHFYSLAAENP 216
>08_02_0141 - 13112399-13112514,13112898-13112994,13113113-13113430
Length = 176
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 313 ASLKPQPVLPARG*SASGRLTSSHRQRRHTRKRQSKAGLSN 435
ASL P+PVLPA +A+ +SS R R S G SN
Sbjct: 2 ASLLPRPVLPA---AAAASTSSSSRCRYRITTSSSARGWSN 39
>06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890
Length = 114
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 377 EVSLPEADHPRAGNTGWGF 321
EV LP + PR G+ WGF
Sbjct: 24 EVQLPRGNDPRGGSYPWGF 42
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = -3
Query: 334 PAGVSAKHWYWPSSDACGLRNTRDPSSLRRAALCSCQLKDFPSFCQEYLTP*SFPSMRHS 155
P+ S +W CG+R S L++A C LK F + L + PS +
Sbjct: 173 PSNPSDSQTFWTICPTCGMRYQYYLSILKKALRCQNCLKPFVAL---DLNEQAVPSGANQ 229
Query: 154 RTVGLFSLKRTSAGWSFSTGYLSTG 80
R+ G++ K + A +F + G
Sbjct: 230 RSAGVW--KSSGAPQNFPGSQANVG 252
>05_05_0299 - 23930657-23932627
Length = 656
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 313 ASLKPQPVLPARG*SASGRLTSSHRQRRHTRKRQSK 420
AS +P+ LP A G+ S+ +RR R+R+ K
Sbjct: 601 ASSEPEKELPNEQGDADGKAKSTRSERRKRRRRELK 636
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 327 PAGVASSRVISFRKTYLIASPAKTHEKTPI 416
PAG SSRV +R ++A P + +K +
Sbjct: 518 PAGAPSSRVAGYRAPEVVADPWRLSQKADV 547
>03_06_0042 +
31247084-31247641,31248396-31248482,31248684-31248779,
31248897-31248998,31249455-31249541,31249692-31249759,
31249879-31249963
Length = 360
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 336 VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL-DCVQPNAY 461
V SSR +R L+AS ++ P EG+ + + D P A+
Sbjct: 57 VISSRGFPYRSLRLLASERSAGKRLPFEGQEYTVQDLAAPGAF 99
>02_04_0217 +
20992238-20992397,20992488-20992792,20992910-20993038,
20993476-20993631
Length = 249
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 361 SGRLTSSHRQRRHTRKR-QSKAGLSNWTVC 447
S LTSS RR RKR S +NW +C
Sbjct: 134 SSNLTSSSSNRRSHRKRGHSSMESNNWVLC 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,653,713
Number of Sequences: 37544
Number of extensions: 356384
Number of successful extensions: 1115
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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