Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_L11
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.1
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 5.6
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 5.6
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 7.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 7.5
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 9.9
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.9
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 480 NGGTYSASDSQSSRYHSGYNGYSGQSSTN 566
N +Y SDSQ S +H G N GQ N
Sbjct: 264 NKHSYKKSDSQQSFHHKGRNTRKGQRHNN 292
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/61 (21%), Positives = 25/61 (40%)
Frame = -1
Query: 516 SFENHWRCKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRLLGNCDLRGYSDHNYPTRKHL 337
+++ +W CK + L + Y ++ + + S K L L + D + KH
Sbjct: 592 AWQEYWHCKIHKLLPKEDASYEQKVVLLTLSLLSKNKHTSLARSLLLSHLDKGWTWNKHS 651
Query: 336 L 334
L
Sbjct: 652 L 652
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 495 CKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRL 397
CK+ + I +LHE +KK+ H K RL
Sbjct: 649 CKYSNIRKEIIARSNLHENLKKLLAIPHDKLRL 681
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 252 PFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLHPRNFWN 133
P+ +AL A +Q + +E KS ++ L PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCLFLL-PRNFWN 837
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 453 YNTQSSALSNGGTYSASDSQSS-RYHSGYNGYSGQSSTNSGHT 578
Y ++ LS +++ + S SGY S S TNSGHT
Sbjct: 346 YGQETELLSTPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHT 388
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 518 KISQWIQRIFRTVFHKFRTHLMIVLVDLKDIRDKL 622
K S QR+ R + H + ++ L +KDI D +
Sbjct: 718 KTSMVAQRLLRLLLHSYSPEHLLKLSGIKDILDSM 752
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 456 NTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHT 578
++ SS+ S+ + S+S S SS S + SST+S H+
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHS 219
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 465 SSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTL 581
SSA S+ + S+S S+S S + SS+ S HT+
Sbjct: 525 SSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTI 563
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 230 IHIVRAFKIPSHISPLSTIKARFTSFIR 147
++I+R FK+ S S LS IK +R
Sbjct: 267 LNIIREFKLESDYSSLSAIKGHLFKLMR 294
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/61 (19%), Positives = 24/61 (39%)
Frame = +3
Query: 375 LEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQ 554
L G N+++ N Q+++ + + Q+ +HS +NGYS
Sbjct: 222 LNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNSNDLQPLQAEAFHSAHNGYSSS 281
Query: 555 S 557
+
Sbjct: 282 T 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,265
Number of Sequences: 5004
Number of extensions: 47430
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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