Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L11
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0232 - 16053034-16053597                                         32   0.48 
10_08_0227 - 16004868-16005449                                         32   0.48 
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281     32   0.48 
06_01_0760 - 5676973-5677830                                           31   1.1  
10_08_0242 - 16120554-16121129                                         30   1.5  
10_08_0236 + 16078162-16078731                                         30   1.5  
10_08_0224 - 15993497-15994075                                         29   2.5  
10_08_0217 - 15962192-15962884                                         29   2.5  
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730     29   3.3  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    29   4.4  
12_01_0840 - 7847239-7847531,7847576-7847675,7848312-7848388,784...    29   4.4  
10_08_0241 - 16111792-16112367                                         29   4.4  
12_01_0841 - 7873458-7874225                                           28   5.9  
10_08_0234 - 16067579-16068157                                         28   5.9  
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846...    28   5.9  

>10_08_0232 - 16053034-16053597
          Length = 187

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
 Frame = +3

Query: 177 GAQRGNMGGNFERAHNMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKG---VY 347
           G+  G   G          +AQ + GG      G  G G  + +GSVF++ +S G     
Sbjct: 51  GSGSGASSGENSVVEGSHAVAQGKGGGGGGAPYGGAGFGGGSGSGSVFSSLDSAGSSKAG 110

Query: 348 GSGNYDLSNLEGRN-FQEGVXXXXXXXXXXXXXHAGY----NTQSSALSNGGTYSASDSQ 512
           G+G  D     G N   +G              H  +    N ++SA + GGT    +  
Sbjct: 111 GTGGGDGEGQAGGNPGSKGYGAGSGMGSGSSMLHEYFPSFTNARASA-NGGGTTDTQNGG 169

Query: 513 SSRYHSGYNGYSG 551
           S   + G +GY+G
Sbjct: 170 SGAGNGGGSGYAG 182


>10_08_0227 - 16004868-16005449
          Length = 193

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
 Frame = +3

Query: 276 GELGEGR---KTRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXH 446
           G +G G     + +GS  TA    G +G G    S   G  F  G              +
Sbjct: 48  GGVGNGNGYGSSESGSGVTATAGGGGWGGGG---SQYNGTGFGSGSGAGSSSGQMAEGYY 104

Query: 447 AGYNTQSSA----LSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSG 572
            GY   +SA      NGG  +     S  Y +G    SG S  N+G
Sbjct: 105 PGYGGHASAGGGGGGNGGGQAGGVDGSGGYGTGGGNGSGSSVANNG 150


>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
          Length = 518

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +3

Query: 291 GRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSS 470
           G  +  GS   +  S+G  GS +    +  G     GV               G  ++S 
Sbjct: 162 GSSSGYGSGGVSYRSRGHGGSSSIGSGSGVGLGATSGVGAGSNVGPSGGCSTCGSGSRSG 221

Query: 471 ALSNGGTYSASDS-QSSRYHSGYNGYS-GQSSTNSG 572
           + + GG+YS S+S  SS   SG N  S G S ++SG
Sbjct: 222 SGAGGGSYSGSNSGSSSSSGSGSNSNSIGGSGSSSG 257


>06_01_0760 - 5676973-5677830
          Length = 285

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/101 (25%), Positives = 32/101 (31%), Gaps = 4/101 (3%)
 Frame = +3

Query: 285 GEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRNF---QEGVXXXXXXXXXXXXXHAGY 455
           G G  +  GS +  A   G YG   Y     +G      Q G                GY
Sbjct: 127 GSGYGSGFGSGYGQAGGYGPYGGNAYAQGGGQGGGGGGGQNGGSGSGSGSGSGYGQAGGY 186

Query: 456 NTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQ-SSTNSGH 575
                     G Y+    Q      G NG SGQ S + SG+
Sbjct: 187 GPYYGPYGGSGAYAQGGGQGGGGGGGQNGGSGQGSGSGSGY 227


>10_08_0242 - 16120554-16121129
          Length = 191

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
 Frame = +3

Query: 285 GEGRKTRTG-SVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNT 461
           G G  T +G S +  A++ G  G G    S   G     G              + GY  
Sbjct: 51  GLGSGTGSGRSGYNGAHASGGGGGGGGGYSQYGGSGSGSGSGSGSGSSQTSQNGYYGYGG 110

Query: 462 QSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSG 572
            SSA  +G    A   Q+  Y   Y G+   S T SG
Sbjct: 111 SSSAGGSGA--GAGAGQAGGYWPSY-GHGSGSGTGSG 144


>10_08_0236 + 16078162-16078731
          Length = 189

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 2/110 (1%)
 Frame = +3

Query: 249 MGGLVKQVQGELGEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXX 428
           +G +V    G     R +R  S  +  N  G  G   YD     G     GV        
Sbjct: 9   LGFVVLLSMGLANAARVSRYSS--SDGNGSGGGGGTAYDNGGAAGSGSGYGVSQGGSNGA 66

Query: 429 XXXXXHAGYNTQSSALSNG--GTYSASDSQSSRYHSGYNGYSGQSSTNSG 572
                 +G    SS       G+ + S S SS+  +G  GY G+S    G
Sbjct: 67  HATAGGSGGGGGSSQYGGSAYGSGNGSGSSSSQTSNGEGGYGGESDAGGG 116


>10_08_0224 - 15993497-15994075
          Length = 192

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/96 (23%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
 Frame = +3

Query: 300 TRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHA-----GYNTQ 464
           T    V   AN++G    G      L G     G              H+     G    
Sbjct: 20  THAARVARYANAQGTGSGGGNGGGYLNGGGVGSGSGYGVATSGHGAHAHSSGGGGGGGAT 79

Query: 465 SSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSG 572
           S     GG + A  S S      Y GY+G +S   G
Sbjct: 80  SYGTGYGGGFGAGSSSSQTSSGYYQGYTGDASAGGG 115


>10_08_0217 - 15962192-15962884
          Length = 230

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
 Frame = +3

Query: 285 GEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQ 464
           G G  + +GS +  A   G +G G Y     +G     G               +GY   
Sbjct: 85  GSGYGSGSGSGYGQAGGYGSHG-GAYAQGGGQGGG---GGGGANGGSGYGSGSGSGYGQA 140

Query: 465 SSALSNGGTYSASDSQSSRYHSGYNGYSGQ-SSTNSGH 575
                +GG Y+    Q      GYNG SG  S + SG+
Sbjct: 141 GGYGPHGGAYAQGGGQGGGGGGGYNGGSGYGSGSGSGY 178


>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
          Length = 802

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 444 HAGYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTL**FWSISRIYG-TS 620
           H  Y   S  +SNG  + +S+ +SS  H G+  +   S     H +    S+  +    S
Sbjct: 143 HFSYTHYSRKMSNGELFDSSNRKSSLGHDGFRDWRHVSERLKEHEV----SVDHMTNMNS 198

Query: 621 WKTTRIR 641
           W   R+R
Sbjct: 199 WNELRVR 205


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
 Frame = +3

Query: 303 RTGSVFTAANSKGVY--GSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSSAL 476
           R GS +T  N   +Y   S  Y  S +  R+    V                   +S+AL
Sbjct: 237 RLGSNYTTPNRSAIYKMSSSPYFKSAVSSRDLFGTVSPYQAPSSLHTFGRQVLKRKSAAL 296

Query: 477 SNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGH 575
           +N    SAS     + H  YN  S    T SGH
Sbjct: 297 NNE---SASVGPIRKMHQRYNRVSPLLQTRSGH 326


>12_01_0840 -
           7847239-7847531,7847576-7847675,7848312-7848388,
           7848486-7848738
          Length = 240

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/69 (27%), Positives = 24/69 (34%)
 Frame = +3

Query: 345 YGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSSALSNGGTYSASDSQSSRY 524
           YGSG      + G ++ +G              HA    Q      GG      S  S Y
Sbjct: 169 YGSGYGQGGGVCGGSYGQGGGGGGGGGGQGGGAHARGYGQGGGGGGGGGQGGGSSSGSGY 228

Query: 525 HSGYNGYSG 551
            SGY G +G
Sbjct: 229 GSGYGGGAG 237


>10_08_0241 - 16111792-16112367
          Length = 191

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
 Frame = +3

Query: 276 GELGEGRKTRTGSV-FTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAG 452
           G  G+G    +GS  +  A++ G  G G    S   G     G              + G
Sbjct: 48  GGAGKGSGVGSGSSNYYGAHASGGGGGGGGGYSQYGGSGSGSGYGTGLGSSQTSQNGYYG 107

Query: 453 YNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSG 572
           Y   SSA   G        Q+  Y   Y G+   S T SG
Sbjct: 108 YGGSSSA--GGAGAGGGAGQAGGYWPSY-GHGSGSGTGSG 144


>12_01_0841 - 7873458-7874225
          Length = 255

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 32/128 (25%), Positives = 38/128 (29%)
 Frame = +3

Query: 174 YGAQRGNMGGNFERAHNMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVYGS 353
           YG  RG  GG + +     G    Q GG         G G   + G        +G  G 
Sbjct: 132 YGQGRGASGGGYGQGGGGGG-GGGQGGGNGSGYGSGYGSGYG-QGGGASGGGYGQGGGGG 189

Query: 354 GNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSSALSNGGTYSASDSQSSRYHSG 533
           G        G  +  G              HAG   Q      GG         S Y SG
Sbjct: 190 GGGGQGGGNGSGYGSGYGSGYGQGGGV---HAGGYGQGGGGGGGGGQGGGSGSGSGYGSG 246

Query: 534 YNGYSGQS 557
           Y G +G S
Sbjct: 247 YGGGAGGS 254


>10_08_0234 - 16067579-16068157
          Length = 192

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +3

Query: 450 GYNTQSSALSNGG---TYSASDSQSSRYHSGYNGYSGQSSTNSG 572
           G N+Q      GG     S+S   ++ Y+SGY GYS       G
Sbjct: 77  GGNSQYGGYGAGGGSGVGSSSSQYATGYYSGYGGYSSAGGNGGG 120



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 3/122 (2%)
 Frame = +3

Query: 213 RAHNMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVY---GSGNYDLSNLEG 383
           R  N +G    Q GG V  V G  G G  +  G+  + +N        G G    S   G
Sbjct: 27  RYSNAEGNGSGQGGG-VGYVNGG-GSGSGSGAGAAQSGSNGAHATAGGGGGGGGNSQYGG 84

Query: 384 RNFQEGVXXXXXXXXXXXXXHAGYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSST 563
                G              ++GY   SSA  NGG      +  +   SG    SG  S 
Sbjct: 85  YGAGGGSGVGSSSSQYATGYYSGYGGYSSAGGNGGGGGGGQAGGNWGSSGSGDGSGAGSG 144

Query: 564 NS 569
           +S
Sbjct: 145 SS 146


>10_05_0038 -
           8458901-8459207,8459367-8459705,8459710-8459913,
           8460374-8460492
          Length = 322

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 17  IYSNITVKRRYGA-LTAFSCDISFSCGKT*TVPRKRRF 127
           +Y   T +RR GA L+  +C++S  C     +PR+ R+
Sbjct: 134 VYQEKTRRRRRGAKLSTATCEVSLPCATMVRMPRRLRW 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,318,750
Number of Sequences: 37544
Number of extensions: 300680
Number of successful extensions: 895
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)