Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L10
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   0.48 
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    24   5.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   7.8  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    24   7.8  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 291  KLKVYYYLCTKTYNSIYILKLIFYKSQL 208
            KL   YYL T+++  +  L+L+FYK  +
Sbjct: 1203 KLYERYYLITRSFIGVAALQLLFYKKNI 1230


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 139 NGVSNFFQPALKSSD 95
           +G+S  FQP LK+SD
Sbjct: 91  SGISKSFQPVLKTSD 105


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 285 KVYYYLCTKTYNSIYILK 232
           KV YY  TKTY  +++L+
Sbjct: 59  KVKYYGETKTYGEVFVLE 76


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 270 LCTKTYNSIYILKLIFYKS 214
           LC  ++ SIY  KL++ KS
Sbjct: 306 LCLSSFKSIYDTKLLYLKS 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,495
Number of Sequences: 5004
Number of extensions: 19526
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)