Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L10
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864     26   7.1  
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    26   9.3  

>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
          Length = 203

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 6   ASATAAHTDVFNRNDYSLGGKLNLFKTPTTSLDFNAG 116
           A+A A    VF+  D+ +GGK +    PT + D + G
Sbjct: 55  AAAVATEGPVFDMPDFKMGGKKSDDAAPTDAGDEDGG 91


>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 16  PPHTPMSLTATTTLWAEN 69
           PP  P+S T TTT W  N
Sbjct: 91  PPPPPLSPTPTTTSWTTN 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,263,881
Number of Sequences: 37544
Number of extensions: 124458
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)