Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_L09
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 0.84
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 27 1.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 27 2.6
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 25 5.9
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 25 5.9
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 7.8
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 7.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.16
Identities = 35/139 (25%), Positives = 60/139 (43%)
Frame = +1
Query: 145 ITSGVGWDSILTFFSAELSSELGAGCDRSLHTRVTGSRSPSGPHCSVAPSNFNSSGST*A 324
+TS V +T +E SS +G+G D + + T S S SVA S +S S+ +
Sbjct: 897 VTSSVA--PAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSVAASVTPTSSSSAS 954
Query: 325 SRSTFLWLGMTTSDARPSPSERLFVPISTLYGVLGSTNASITCTSALSCNSGWLLCLFVL 504
S S+ + +T+ + S S V GS+ +S+ SA ++ + V
Sbjct: 955 SWSSSSEVDPSTAASATGSSTSSIATAS----VSGSSTSSVATASATDSSTSSIAAASVT 1010
Query: 505 K*SNISVGICNFCGTAMST 561
S SV + ++ S+
Sbjct: 1011 GSSTSSVATASVTDSSTSS 1029
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.3 bits (60), Expect = 0.84
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 280 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLYGVLGSTNAS 444
SV PS+ N+ + S + +WL MT +P PS ++ P S V+ + S
Sbjct: 252 SVTPSSINNHTAVPLSPTLAVWLPMTQPTFQP-PSANVYQPASNANQVITPVSIS 305
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 187 SAELSSELGAGCDRSLHTRVTGSRSPS--GPHCS 282
S+ LSS +G G S +++VT ++ PS PH S
Sbjct: 3657 SSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSS 3690
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 145 ITSGVGWDSILTFFSAELSSELGAGCDRSLHTRVTGSRS 261
+ GV + + FF+ ELS E +GC+ RVT SRS
Sbjct: 14 VADGVFYAELNEFFTRELSEEGYSGCE----VRVTPSRS 48
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.6
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +1
Query: 244 VTGSRSPSGPHCSVAPSNFNSSGST*ASRSTFLWLGMTTSDARP---SPSERLF---VPI 405
V+ + PS V+ S+ + S S + STF L +TS ++P S S F P
Sbjct: 144 VSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPT 203
Query: 406 STLYGVLGSTNASITCTSALSCNSGWL 486
ST L S++ + +S S +S L
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTL 230
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 403 ISTLYGVLGSTNASITCTSALSCNSGWLLCLF 498
I+ L+ V+G+ A CTS+LS LC F
Sbjct: 90 INILFTVVGTVTAVWYCTSSLSIEKKIALCAF 121
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 569 NVVVLIAVPQKLQIPTDILDYLRTNKQSNQPELQD--RADVQVMEAFVEPNTPYRVEIGT 396
N+ V QK+ +P+ +LD L E+ A++ V E+ N + +GT
Sbjct: 257 NIAATQVVSQKMSVPSSLLDQLYHAMPHKLMEISQNTNANITVEESDSNSNEKFISVVGT 316
Query: 395 NNRSE 381
+ ++
Sbjct: 317 SEANQ 321
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 223 RNRPLIRKTVPPRKMSKSNPNRP 155
RN P RK +PP K S + RP
Sbjct: 111 RNDPYARKDMPPMKSSAAVTERP 133
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 7.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 407 EIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGER 255
+I T + + G A EV S + A + DE+ L G+ E+ PE ER
Sbjct: 59 QIATYDLATLPGTAKEV---SAYGPEGAAAAEEDEIDLFGSDEEEDPEAER 106
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 380 LQNDYSYRSQLYMEY*ALQTPP*PVHRLCPVTRAGCSVCSSSS 508
+QN S R+ + L TP P H++ TRA S+ +++
Sbjct: 24 IQNILSARTLKICRFRFLPTPSHPTHKMAQETRAISSISEAAN 66
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 405 LNSIWSIRLYKRLHNLY 455
L +W +R YK LH+ Y
Sbjct: 288 LLKVWDLRTYKELHSYY 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,162
Number of Sequences: 5004
Number of extensions: 45764
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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