Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_L09
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 31 0.65
08_02_0988 + 23346696-23347523 30 1.1
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 29 2.0
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 29 2.6
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 29 2.6
07_01_1023 + 8840754-8842988,8843189-8843362 29 3.4
03_04_0006 + 16257288-16259522 29 3.4
10_01_0168 - 1883380-1883594,1884572-1888325 28 4.6
06_03_0592 + 22585546-22588573,22588680-22589032 28 4.6
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598... 27 8.0
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 27 8.0
01_07_0384 + 43209423-43210241 27 8.0
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 31.1 bits (67), Expect = 0.65
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 280 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLYGVLGSTNASITCTS 459
S A +++NSSG++ + W G+T S RP+ L +P S L G L ++T
Sbjct: 43 SSALASWNSSGASFCN-----WEGVTCSRRRPTRVASLSLPSSNLAGTLSPAIGNLTFPR 97
Query: 460 ALSCNSGWL 486
L+ +S L
Sbjct: 98 RLNLSSNGL 106
>08_02_0988 + 23346696-23347523
Length = 275
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 467 DRADVQVMEAFVEPNTPYRVEIGTNNRSEGDGRA---SEVVIPSQRNVDLEAQVD 312
DRA V+ + N P+ ++ ++ S GD A S+ + PS R+ D + QV+
Sbjct: 172 DRAAVEFRGPRAKLNFPFPEQLSAHDDSNGDASAAAKSDTLSPSPRSADADEQVE 226
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -1
Query: 374 GRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGERDPVTLVCRLRSQPAPNSEDS 195
G AS+ ++RNV + + +L+G + P RDP+ + +S DS
Sbjct: 540 GSASQSSRSNRRNVGSNEDTESECGRLVGTVRRHTPIDTRDPIGAIIHFY---LGDSFDS 596
Query: 194 SAEKNVKIESQP 159
S+E NV + QP
Sbjct: 597 SSETNVLRKLQP 608
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 266 EGERDPVTLVCRL-RSQPAPNSEDSSAEKNVKIESQPTPEVIP 141
E ER P+ + +L R + AP S ++ + N +ES+ V+P
Sbjct: 15 EDERRPIGSLFKLKRKRRAPGSAEAKGDSNPSVESEAPDGVVP 57
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -1
Query: 419 PYRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGERDPVTL 240
P R E + R+ D + +VIPS V+ V+ ++ + G + CG E+D L
Sbjct: 452 PPRCEETASERAPADNSRA-IVIPSAEPVE---DVELSDIDVRGLCKMCGNPEEKDKRFL 507
Query: 239 VC 234
VC
Sbjct: 508 VC 509
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 503 RTNKQSNQPELQDRADVQVMEAFVEPNTPYRVEIGTNNR-SEGDGRASEVVIPSQRNVDL 327
R N QS+ +Q ++ + + + Y I T+ +EG+ AS +P++ N D
Sbjct: 51 RNNAQSSGVPVQTKSTIPSKQLTIPAAQCYASSISTSILWNEGNNNASSQTLPNEPNCDT 110
Query: 326 EAQVDPDE 303
+ P+E
Sbjct: 111 SSDKLPEE 118
>03_04_0006 + 16257288-16259522
Length = 744
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 567 RRCTHRSTAKVADTYRYIGLLEDEQTEQPARVTGQSR 457
RR + S +V + YR+I + + EQP ++T ++R
Sbjct: 305 RRKSQFSDVRVEEQYRHIEIFDVASPEQPVKITQKTR 341
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 348 WDDNLRRTAVTFRTIIRTDLNSIWSIRLYKRLHNLYIGSVL*LGLVALFVRPQVIQYIGR 527
+DD LR+ + T RT++ N+ SI + +L G L + L +RP ++++ R
Sbjct: 547 FDDFLRKQSTTLRTLLYPTWNTYGSIHHLSKCISLR-GLQL-YEIKELPIRPIKLKHL-R 603
Query: 528 YLQLLRYCD 554
YL L CD
Sbjct: 604 YLNLSENCD 612
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 454 TSALSCNSGWLLCLFVLK*SNISVGICN 537
+S LS N W+LC F+ +IS+ ICN
Sbjct: 4 SSVLSPNIAWVLCHFIF--CSISLAICN 29
>06_03_0792 +
24658324-24658763,24659167-24659387,24659765-24659827,
24659849-24660102
Length = 325
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 386 SEGD-GRASEVVIPSQRNVDLEAQVDPDE 303
++GD G+ +EV P D+EA+VD D+
Sbjct: 111 TDGDSGKENEVATPDAEKEDVEAEVDGDD 139
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 428 ALQTPP*PVHRLCPVTRAGCSVCSS 502
AL T P P H +CP+ + SV SS
Sbjct: 721 ALPTQPPPEHFICPILKVPVSVSSS 745
>01_07_0384 + 43209423-43210241
Length = 272
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 370 RPSPSERLFVPISTLYGVLGSTNASITCTSALSCNSGW 483
RP S + ST G+++ASI T+ +S N+G+
Sbjct: 204 RPRQSSSASISTSTSTSYTGTSSASINMTTMISLNNGF 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,203,137
Number of Sequences: 37544
Number of extensions: 308173
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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