Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L08
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    66   3e-12
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    45   8e-06
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    27   3.1  
SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces p...    26   5.5  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    26   5.5  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   9.5  

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
 Frame = +2

Query: 158 NFIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLR 337
           NFI   G++L L    +ATA I++H+F+      +Y  Y +   C+  A K  D   +LR
Sbjct: 49  NFIINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLR 108

Query: 338 DAVNVAYNSINRGAGPL--ELGEEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRCLLHYL 511
           D V        + +  L  E  +EYW WR  +   E ++L  L F+      +  +L ++
Sbjct: 109 DIVINCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFI 168

Query: 512 RSLQEWFPAIQWRTAPIARTAMAFLQDFHHSAAILDYRAPHVAVA 646
           +     F A       + + A  ++ D   S A L Y    +A A
Sbjct: 169 KK----FVA---DDKNVTKVAWTYINDSTRSIACLLYSPKTIAAA 206


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
 Frame = +2

Query: 149 LSTNFIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPV 328
           L + +I E G+ L L    V    I + ++         D   I  AC+    K  + P 
Sbjct: 30  LGSEWIQEAGVLLNLTQNCVIVCLILFRRYCTLYPPRVPDLDAIVMACVSIGSKTTETPA 89

Query: 329 RLRDAVNVA------YNSIN---RGAGPLEL-GEEYWLWRGAVAQAELLVLRLLGFNLDT 478
            ++D  NV       +   N   RG    +L  EE +  R  ++  EL VLR L F+   
Sbjct: 90  SVQDICNVVVYLKERFKDTNFEARGFIAHDLYSEEMYSSRNRLSNMELEVLRALNFDTHI 149

Query: 479 PSSHRCLLHYLRSLQ 523
              H+  +HYL++LQ
Sbjct: 150 VIPHKLAIHYLQTLQ 164


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 536 PGTTPEVIASNAIDIYVKKEYPS*ILVVLKPTAQLEPLHLSITNILRLIPK 384
           PG    V+       YV  E     +++L+PT + +PL L I N+   +P+
Sbjct: 62  PGRVEMVLPEKIQKKYVINEIAK--VLLLRPTVKTDPLSLPIQNVPARLPE 110


>SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 425 VAQAELLVLRLLGFNLDTPSSHRCLLHYLRS 517
           V + ELLVLR   F +    +H   LH LRS
Sbjct: 51  VYETELLVLRFREFGVKDNHNHPINLHSLRS 81


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 254 KNDYDCYVICTACLCAAGKP 313
           K+D DC+V+ TA +  A KP
Sbjct: 65  KSDEDCWVVATAYMTTALKP 84


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 219 QYFITNFSKRLTKMTTIVMLSALLACVRLENREMN 323
           Q+F  N SK  TK +++V+  + +    LEN  ++
Sbjct: 44  QFFSINVSKSTTKKSSVVIKPSTITAPWLENEYLD 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,334
Number of Sequences: 5004
Number of extensions: 59506
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)