Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_L08
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 55 6e-08
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 55 6e-08
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 49 4e-06
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 47 2e-05
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 36 0.028
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 32 0.46
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 32 0.46
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344... 31 0.61
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711... 31 0.61
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 30 1.4
01_06_1665 - 38988014-38988078,38988459-38988546,38988921-389890... 29 2.4
01_05_0783 + 25183361-25185628 29 2.4
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 28 5.6
01_06_0323 - 28476459-28476915,28477075-28477525,28477623-284779... 28 7.5
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 54.8 bits (126), Expect = 6e-08
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Frame = +2
Query: 161 FIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRD 340
F+ + G++L + T+ATA +F H+FF D I T C+ AGK + P L+D
Sbjct: 70 FLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKD 129
Query: 341 AVNVAYNSINRGAGP--------------LELGEEYWLWRGAVAQAELLVLRLLGFNLDT 478
+ ++Y I++ +E E Y + + E +VL LGF+L+
Sbjct: 130 VILISYEIIHKKDAAAVQRIKQKSLDYFGVEWQEVYEQQKELILLGERVVLVTLGFDLNV 189
Query: 479 PSSHRCLLHYLRSLQEWFPAIQWRTAPIARTAMAFLQDFHHSAAILDYRAPHVAVACL 652
++ L+ ++ F Q +A+ A F+ D ++ L ++ H+A +
Sbjct: 190 HHPYKPLVEAIKK----FKVAQ---NALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAI 240
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 54.8 bits (126), Expect = 6e-08
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Frame = +2
Query: 149 LSTNFIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPV 328
L +FI + GI+L L T+ATA +F H+F+ I T C+ A K D P
Sbjct: 73 LYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPC 132
Query: 329 RLRDAVNVAYNSINR----GAGPLELGEEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRC 496
L + VAY ++ R A + + + + + E LVL + F+ + +R
Sbjct: 133 PLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKALILTGERLVLTTVRFDFNIQHPYRP 192
Query: 497 LLHYLRSLQEWFPAIQWRTAPIARTAMAFLQDFHHSAAILDYRAPHVAVACL 652
LL + L I + + + A F+ D+ + L Y+ ++A L
Sbjct: 193 LLDAMEKL-----GISQK--EVKQVAWNFVNDWLKTTLCLQYKPQYIAAGSL 237
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 48.8 bits (111), Expect = 4e-06
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Frame = +2
Query: 230 HKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRDAVNVAYNSINR---GAGP-LELG 397
+KF +++ + I T C+ AGK + P L+D + V+Y I++ AG ++
Sbjct: 120 YKFLLPMERDSIVVHTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQK 179
Query: 398 EEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRCLLHYLRSLQEWFPAIQWRTAPIARTAM 577
E Y + + AE +VL LGF+L+ ++ L+ +R F Q +A+ A
Sbjct: 180 EVYDQQKELILLAERVVLATLGFDLNVHHPYKPLVEAIRK----FKVAQ---NALAQVAW 232
Query: 578 AFLQDFHHSAAILDYRAPHVAVACL 652
F+ D ++ L ++ H+A +
Sbjct: 233 NFVNDGLRTSLCLQFKPHHIAAGAI 257
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 158 NFIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLR 337
+FI + G++L L T+ATA + H+F+ + + T C+ A K D P L+
Sbjct: 41 SFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQ 100
Query: 338 DAVNVAYNSINR 373
+ VAY ++ R
Sbjct: 101 RVIIVAYETMYR 112
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Frame = +2
Query: 206 VATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRDAVNVAYN-SINRGAG 382
+ATA + +H+F+ + + + +C+ AGK + P R + + V + R
Sbjct: 1 MATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENV 60
Query: 383 PLE----LGEEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRCLLHYLRSLQ 523
P+E ++Y + + + E +L+ +GF H+ + +YL +L+
Sbjct: 61 PIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISNYLATLE 111
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 20 KLWF*KYYLLHLYTMKDVIDVLALQNNRRERRLPDYRSTPGHALS 154
KLW Y YTM D ID++ R L + PGHALS
Sbjct: 225 KLWNGAYSYSERYTMDDAIDIVQYAERRGVNVLAEI-DVPGHALS 268
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 20 KLWF*KYYLLHLYTMKDVIDVLALQNNRRERRLPDYRSTPGHALS 154
KLW Y YT D +D++ NR + + PGHALS
Sbjct: 218 KLWNGSYSFSERYTTSDAVDIVRYAENRGVNVMAEI-DVPGHALS 261
>07_03_0328 +
16833423-16833541,16833638-16833791,16834449-16834490,
16834964-16835104,16835471-16835728,16835857-16836492
Length = 449
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 452 RLLGFNLDTPSSHRCLLHYLRSLQEWFPAIQWR 550
R GF LD + + LRSL+ W A+QWR
Sbjct: 389 RFHGFKLDCSIHSKLPVRLLRSLERWGLAVQWR 421
>06_01_0922 -
7113781-7113942,7114093-7114235,7115305-7115506,
7115590-7115685,7117053-7117139,7117237-7117638
Length = 363
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 137 PGHALSTNFIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYD--CYVICTACLCAAGK 310
PG + S ++I + G QPAT A + +F D+ ++C ACL A K
Sbjct: 123 PGWSESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPDHGWASQLLCVACLSLAAK 182
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 502 ALLAITSGVVPGHTMAYSTDCPYSNGFSARFPPFCCHTGLSCSS 633
ALL+ S + H+ A S+ SNG S FC G++CSS
Sbjct: 37 ALLSFRSHIAKDHSDALSSWSVVSNGTSDGTNGFCSWRGVTCSS 80
>01_06_1665 -
38988014-38988078,38988459-38988546,38988921-38989082,
38989268-38989359,38989896-38990007,38990040-38990181,
38990448-38990668
Length = 293
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 586 QKSHCCTGNRCCTP 545
Q SHCC+ N CC P
Sbjct: 62 QTSHCCSSNGCCRP 75
>01_05_0783 + 25183361-25185628
Length = 755
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 50 HLYTMK-DVIDVLALQNNRRERRLPDYRSTPGHALSTNFIFECGIKLGLQPATVATAAIF 226
HL+T D+ A+ N+R E + Y +ST F G+ ATV A+F
Sbjct: 340 HLFTATGSTYDITAIVNDRFEIDMDGYHRMGRINMSTFFALSYGLGFATIAATVTHVALF 399
Query: 227 YHK 235
+ K
Sbjct: 400 HGK 402
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -1
Query: 613 YGSRMVE-ILQKS--HCCTGNRCCTPL 542
Y SR+VE L KS CC CC PL
Sbjct: 687 YSSRLVEDCLSKSLHRCCGSTNCCNPL 713
>01_06_0323 -
28476459-28476915,28477075-28477525,28477623-28477904,
28478089-28478118,28480560-28481433
Length = 697
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 227 YHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRDAVNVAYNSINR 373
YH+ ++ DK+D + + L ++ KP + R R+ +N+A +INR
Sbjct: 552 YHQCYQLTDKSDVYSFGVVLVELISS-KPAVDITRQRNEINLAGMAINR 599
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265,840
Number of Sequences: 37544
Number of extensions: 390595
Number of successful extensions: 1162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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