Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_L08
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 37 0.011
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 37 0.011
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 33 0.13
U50199-3|AAA91263.1| 555|Caenorhabditis elegans Hypothetical pr... 31 0.54
AM748820-1|CAO72174.1| 555|Caenorhabditis elegans hexosaminidas... 31 0.54
Z77738-1|CAB01297.1| 89|Caenorhabditis elegans PP1-like Ser/Th... 30 1.2
AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical ... 29 3.8
Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical pr... 27 8.8
L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protei... 27 8.8
L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protei... 27 8.8
>Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical
protein F43D2.1 protein.
Length = 252
Score = 40.3 bits (90), Expect = 0.001
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Frame = +2
Query: 170 ECGIKLGLQPA-TVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRDAV 346
E G L +P T+ AA+++H+F+ + V +CL AGK D P + +D
Sbjct: 39 EVGNALNCKPRPTIGVAAVYFHRFYMIHSFQSFSREVTALSCLFLAGKVEDFPKKCKDVC 98
Query: 347 NVAYNSINRGAGPLELGEEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRCLLHYLRSLQE 526
A E+ +Y V E ++L L F+L + LL Y +
Sbjct: 99 QAAVTHYP------EIYSKYQNLVDDVMGLERVLLHSLKFDLHVALPYDALLDY----KM 148
Query: 527 WFPAI-QWRTAPIARTAMAFLQDFHHSAAILDYRAPHVAVACL 652
FP + + + + A F+ D ++ + +A+A L
Sbjct: 149 MFPDMNREKITDAVQIAWTFINDSIYTTLCITTEPQMIAIALL 191
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 37.1 bits (82), Expect = 0.011
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Frame = +2
Query: 149 LSTNFIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPV 328
L I + I L L AT I + +++ + Y ACL A K +EP
Sbjct: 108 LGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPR 167
Query: 329 RLRDAVNVAY------------NSIN----RGAGPLELGEEYWLWRGAVAQAELLVLRLL 460
R R+ NV + + IN RG P + Y + + +E +L L
Sbjct: 168 RPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYINTKQHMINSERRILATL 227
Query: 461 GFNLDTPSSHRCLLHYLRSLQEWFPAIQWRTAPIARTAMAFLQDFHHSAAILDYRAPHVA 640
GF + HR ++ Y +L I I + + ++ D + + Y+ +A
Sbjct: 228 GFVVHVKHPHRLIVAYGHTL-----GITQSRPDILQRSWNYMNDGLRTDIFMRYKPETIA 282
Query: 641 VACL 652
AC+
Sbjct: 283 CACI 286
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 37.1 bits (82), Expect = 0.011
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Frame = +2
Query: 149 LSTNFIFECGIKLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPV 328
L I + I L L AT I + +++ + Y ACL A K +EP
Sbjct: 108 LGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPR 167
Query: 329 RLRDAVNVAY------------NSIN----RGAGPLELGEEYWLWRGAVAQAELLVLRLL 460
R R+ NV + + IN RG P + Y + + +E +L L
Sbjct: 168 RPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYINTKQHMINSERRILATL 227
Query: 461 GFNLDTPSSHRCLLHYLRSLQEWFPAIQWRTAPIARTAMAFLQDFHHSAAILDYRAPHVA 640
GF + HR ++ Y +L I I + + ++ D + + Y+ +A
Sbjct: 228 GFVVHVKHPHRLIVAYGHTL-----GITQSRPDILQRSWNYMNDGLRTDIFMRYKPETIA 282
Query: 641 VACL 652
AC+
Sbjct: 283 CACI 286
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/104 (20%), Positives = 45/104 (43%)
Frame = +2
Query: 215 AAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRDAVNVAYNSINRGAGPLEL 394
AA +++FF D + AC+ AGK D P +L+ V + +
Sbjct: 77 AATLFNRFFNVHSLKRCDFRDVAAACVFLAGKNEDAPKKLKYVVTQLWQFKYPHNKQFQS 136
Query: 395 GEEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRCLLHYLRSLQE 526
+ + V E ++L+ + F+++ H+ +L +R +++
Sbjct: 137 EQHFLDQCNVVTLIEDVLLKTISFDINVDLPHQYVLKLMRDVEK 180
>U50199-3|AAA91263.1| 555|Caenorhabditis elegans Hypothetical
protein T14F9.3 protein.
Length = 555
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 50 HLYTMKDVIDVLALQNNRRERRLPDYRSTPGHALS----TNFIFECGIKLGLQ 196
H+Y+ +D+ DV+A R R +P++ PGH S F+ EC + G++
Sbjct: 234 HVYSREDIADVIAFARLRGIRVIPEF-DLPGHTSSWRGRKGFLTECFDEKGVE 285
>AM748820-1|CAO72174.1| 555|Caenorhabditis elegans hexosaminidase
protein.
Length = 555
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 50 HLYTMKDVIDVLALQNNRRERRLPDYRSTPGHALS----TNFIFECGIKLGLQ 196
H+Y+ +D+ DV+A R R +P++ PGH S F+ EC + G++
Sbjct: 234 HVYSREDIADVIAFARLRGIRVIPEF-DLPGHTSSWRGRKGFLTECFDEKGVE 285
>Z77738-1|CAB01297.1| 89|Caenorhabditis elegans PP1-like Ser/Thr
protein phosphataseprotein.
Length = 89
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 492 LCEEGVSKLNPSSLKTNSSA*ATAPLHNQYSSPNSKGPA 376
LC + PS++ T+S+ ATA + S PNSK P+
Sbjct: 40 LCSAETTNAQPSTVSTDSTKNATAVTNPLVSGPNSKIPS 78
>AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical
protein Y49F6A.1 protein.
Length = 966
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 131 CDNQANVFHVYYFAMPKRLLRLSL 60
C Q N F + MPKRLLRLS+
Sbjct: 69 CQVQTNSFKIDITKMPKRLLRLSM 92
>Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical
protein F21H7.9 protein.
Length = 1108
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 149 KHARAYCDNQANVFHVYYFAMPKRLLRLSLYINVINSIF 33
KHA Y A+ F+ Y FA+ K L + N+ N F
Sbjct: 345 KHAATYAGQLADSFYAYAFALNKSLTQDPTRSNLKNGSF 383
>L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protein
1.1, isoform b protein.
Length = 438
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/115 (19%), Positives = 47/115 (40%)
Frame = +2
Query: 182 KLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRDAVNVAYN 361
K+ + + A H+F+ YD + AC+ AGK ++ P +L ++V
Sbjct: 67 KMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRE 126
Query: 362 SINRGAGPLELGEEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRCLLHYLRSLQE 526
+R E + E ++L+ + F+L+ H +L ++ + +
Sbjct: 127 RKDRKQLTTETARNE--AAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMKKVDK 179
>L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protein
1.1, isoform a protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/115 (19%), Positives = 47/115 (40%)
Frame = +2
Query: 182 KLGLQPATVATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKPRDEPVRLRDAVNVAYN 361
K+ + + A H+F+ YD + AC+ AGK ++ P +L ++V
Sbjct: 67 KMKIGHTGLCVAHTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRE 126
Query: 362 SINRGAGPLELGEEYWLWRGAVAQAELLVLRLLGFNLDTPSSHRCLLHYLRSLQE 526
+R E + E ++L+ + F+L+ H +L ++ + +
Sbjct: 127 RKDRKQLTTETARNE--AAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMKKVDK 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,702,261
Number of Sequences: 27780
Number of extensions: 340617
Number of successful extensions: 938
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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