Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L07
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0758 + 6362500-6363233,6363709-6365500                           28   5.2  
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    27   9.1  
08_02_0437 - 17177093-17177245,17178261-17178327,17178655-17178674     27   9.1  

>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 491 INFNRNTLKLKVTNVILDVTRYTK*MCNFI--ITKERY*MSFFLS 363
           IN+N   +   V N++LD+  Y     NFI  + K+ Y MS  LS
Sbjct: 458 INYNDKVVHYAVNNMVLDIITYKSIEENFITVMDKDCYQMSIELS 502


>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 110 TAMCNLFYLYYDTKMIHNNNNYPFNYGILSH 202
           TAM + F+L Y T+   N N+    YG +SH
Sbjct: 97  TAMIDTFWLRYTTRPEGNTNSNEDAYGWISH 127


>08_02_0437 - 17177093-17177245,17178261-17178327,17178655-17178674
          Length = 79

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 385 YLSFVMIKLHIYFVYRVTSSIT 450
           +LSF + KLH+Y V +VT+ I+
Sbjct: 14  FLSFALAKLHLYRVPQVTTKIS 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,419
Number of Sequences: 37544
Number of extensions: 218894
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)