Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L06
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   2.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.5  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   9.5  

>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 141 SSSRGIFEPPSEACHNPAHGHSTMLDERCVRRS 239
           S S G FE  S     PAH HS +L    V RS
Sbjct: 499 SISMGAFEQLSTPLEAPAHKHSAVLQPLEVNRS 531


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = +1

Query: 139 TPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRSIQDYHMDTLKYWDI 291
           T + +EY++  +  ++++H    +C T       V +I   H+  + + D+
Sbjct: 96  TVLALEYMDTDLHSMVVKHNRLDECTTRKIFRQIVHAIDYCHLHRVAHRDL 146


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 153 GIFEPPSEACHNPAHGHSTMLDERCVRRSS*KHPGLPYGYVKILGHRFSIPNWWKR 320
           GIF PP+EA H    G    L     + S+ K   +   ++ + G     P++W R
Sbjct: 230 GIFVPPAEAAHAAGGGRGPELIALSHKSSNSKFGTM--RFIIVEGTEKFKPDYWDR 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,737
Number of Sequences: 5004
Number of extensions: 52029
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)