Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L04
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...   249   2e-67
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...   202   3e-53
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...   172   4e-44
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.54 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    29   0.72 
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    28   0.95 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   5.1  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    25   6.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   6.7  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score =  249 bits (610), Expect = 2e-67
 Identities = 110/171 (64%), Positives = 146/171 (85%), Gaps = 1/171 (0%)
 Frame = +3

Query: 111 NIKVFTGSSHPEIAKKIVARLGIDLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGE 290
           +IK+F G+SHPE+A+K+  R+G+ LG+    ++SN+ET+V IGESVR EDV+I+Q+GCG 
Sbjct: 5   SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64

Query: 291 INDNLMELFIMINACKIASASRVTAVIPCFPYSRQDKKEKSRAPITAKLLANLISVAGAD 470
           IND+LMEL IMINAC+ ASA R+TA+IPCFPY+RQDKK+KSRAPITA+L+AN++  AG +
Sbjct: 65  INDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAPITARLVANMLQTAGCN 124

Query: 471 HVITIDLHASQIQGFFNIPVDNLYAEPATTKWIQENIPEW-KSSVMVSPDA 620
           H+IT+DLHASQIQGFFN+PVDNLYAEP+  ++I+ENI      +V+VSPDA
Sbjct: 125 HIITMDLHASQIQGFFNVPVDNLYAEPSVLRYIRENIDTTVNPTVIVSPDA 175


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  202 bits (493), Expect = 3e-53
 Identities = 94/169 (55%), Positives = 126/169 (74%)
 Frame = +3

Query: 105 MPNIKVFTGSSHPEIAKKIVARLGIDLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 284
           M +  +  G SHPE+   I  RLGI     + K+F+N ET+VEI ESVR +DV+I+QSG 
Sbjct: 1   MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60

Query: 285 GEINDNLMELFIMINACKIASASRVTAVIPCFPYSRQDKKEKSRAPITAKLLANLISVAG 464
             +ND+LMEL I+I+ACK  SA R+TAV+P FPYS+Q K  K R  ITA+++ANL++VAG
Sbjct: 61  STVNDSLMELLIIISACKGGSAKRITAVMPYFPYSKQSKMRKYRDAITARMVANLLTVAG 120

Query: 465 ADHVITIDLHASQIQGFFNIPVDNLYAEPATTKWIQENIPEWKSSVMVS 611
            DH+IT+DLHASQ+QGFF  PVDNLYAEP   +WI+ N+ +W+ +V+VS
Sbjct: 121 VDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRNVDDWEEAVVVS 169


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score =  172 bits (418), Expect = 4e-44
 Identities = 95/196 (48%), Positives = 125/196 (63%), Gaps = 24/196 (12%)
 Frame = +3

Query: 105 MPNIKVFTGSSHPEIAKKIVARLGIDLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 284
           M N+ VF   SHP++ + I   L +D+GR    KFSN ET+V I +SVRG DVYIV    
Sbjct: 1   MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60

Query: 285 GEINDNLMELFIMINACKIASASRVTAVIPCFPYSRQ-DKK-EKSRAPI----------- 425
           G++ND+LMEL IMI+ACK ASA +VTAV+P FPYSRQ D+K   S AP+           
Sbjct: 61  GQVNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQPDQKFSFSGAPLSDLQDAVVPCK 120

Query: 426 -----------TAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEPATTKWIQ 572
                      +  L+A+L+  +GADH+IT+DLH  Q QGFF+IPVDNL+  P    +I 
Sbjct: 121 KQTGYHPWIAQSGTLVADLLMCSGADHIITMDLHDPQFQGFFDIPVDNLFGRPLLKHYIS 180

Query: 573 ENIPEWKSSVMVSPDA 620
            NIP + ++V+VSPDA
Sbjct: 181 LNIPNYHNAVIVSPDA 196


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 36  NPDETTSKEDNKKQRAFNNPNSRMPNIKV 122
           +P +T SK  +KKQR  +NP+  +P+  V
Sbjct: 39  SPGQTVSKRLHKKQRVVSNPDLSLPSSPV 67


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 378 FPYSRQDKKEK-SRAPITAKLLANLISVAGADHVITIDLHASQIQGFF----NIPVDNLY 542
           F Y R  ++EK +   ITA+ ++ L     +DHV  +++    I G +     I +DNL 
Sbjct: 2   FVYKRDGRQEKVAFDKITAR-VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 543 AEPATT 560
           AE A T
Sbjct: 61  AETAAT 66


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 372 PCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHA 497
           PCF Y  + K+ K    I +  + N  S  G   V  IDLH+
Sbjct: 93  PCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHS 134


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 529 TGILKKPWICDACK 488
           T I K+ W CDACK
Sbjct: 303 TSIPKEDWYCDACK 316


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 93  PNSRMPNIKVFTGSSHPEIAKKIVARLGI 179
           PNS+   +   +GSSHP  + ++  R  +
Sbjct: 20  PNSKSSRLSSTSGSSHPSSSSRLTVRSAV 48


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 81  PFVFYYLLCLWFRQGSF 31
           PF F +  CL+FR+ SF
Sbjct: 128 PFNFIFFACLFFRKASF 144


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 LHASQIQGFFNIPVDNLYAEPATTKWIQENIP 584
           L  SQI G     ++NL +E    +WI+ + P
Sbjct: 224 LSLSQINGLSLNTINNLQSEDGPFQWIERSFP 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,548
Number of Sequences: 5004
Number of extensions: 49687
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)