Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_L04
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 168 4e-42
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 86 1e-20
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 33 0.24
06_01_0088 + 698237-698251,698738-698770,699177-699280,699382-69... 29 3.0
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265... 29 3.9
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566... 29 3.9
12_02_0489 - 19619623-19619748,19619850-19620165,19620487-196207... 27 9.1
11_02_0093 - 8238947-8239615 27 9.1
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613... 27 9.1
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 168 bits (408), Expect = 4e-42
Identities = 78/174 (44%), Positives = 122/174 (70%)
Frame = +3
Query: 96 NSRMPNIKVFTGSSHPEIAKKIVARLGIDLGRATTKKFSNKETNVEIGESVRGEDVYIVQ 275
+ R +K+F+G+++ +A++I + LG+DLG+ K+F++ E V++ ESVRG DV++VQ
Sbjct: 84 DGRDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQ 143
Query: 276 SGCGEINDNLMELFIMINACKIASASRVTAVIPCFPYSRQDKKEKSRAPITAKLLANLIS 455
C +N+NLMELF+MI+AC+ ASA +T VIP F Y+R D+K + R ITAKL ANL++
Sbjct: 144 PTCSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLT 203
Query: 456 VAGADHVITIDLHASQIQGFFNIPVDNLYAEPATTKWIQENIPEWKSSVMVSPD 617
AG+D VI D+H++Q G+F+IPVD+++ +P ++ K V+VSPD
Sbjct: 204 EAGSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTIS-KDLVVVSPD 256
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 85.8 bits (203), Expect(2) = 1e-20
Identities = 39/75 (52%), Positives = 55/75 (73%)
Frame = +3
Query: 324 INACKIASASRVTAVIPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQ 503
IN + ASA +TAVIP F Y+R D+K + R I AKL+AN+I+ AGA+ V+ DLH+SQ
Sbjct: 124 INIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAGANRVLVCDLHSSQ 183
Query: 504 IQGFFNIPVDNLYAE 548
G+F+IPVD++Y +
Sbjct: 184 AMGYFDIPVDHVYGQ 198
Score = 31.9 bits (69), Expect(2) = 1e-20
Identities = 9/31 (29%), Positives = 25/31 (80%)
Frame = +3
Query: 114 IKVFTGSSHPEIAKKIVARLGIDLGRATTKK 206
+++F+G+++P ++++I + LG++LG+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = -1
Query: 242 FTNFNVCFFVAEFLCSCSTEVNSEPCNN--FFRNLRMRAPCKHFDVRHS*IWIVKSPLFF 69
F + V F V + + C+ +++S+P + F RN KHFD + +V+SP+
Sbjct: 162 FVEYGVKFGVGDTVV-CAVDLDSKPLASIGFSRNGEWLGIAKHFDASDKGLGLVESPVSS 220
Query: 68 IIFFACGFVRVHLVNLIVK 12
+ + + F V L N++V+
Sbjct: 221 MQWESAIFPHVLLKNVVVE 239
>06_01_0088 +
698237-698251,698738-698770,699177-699280,699382-699457,
699987-700070,700420-700926
Length = 272
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 42 DETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSHPEIAKKIVARLGIDLGRATTKKFSNKE 221
D+T S +Q+ ++ M N VFTG+S A VA+ D+G T +K + ++
Sbjct: 196 DKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMAAED 255
Query: 222 TNVEIGES 245
+ G S
Sbjct: 256 QHKGSGPS 263
>10_08_0740 +
20225351-20225683,20225750-20226022,20226423-20226548,
20226676-20226732,20226994-20227083
Length = 292
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 187 PRSIPSLATIFFAISG*ELPVNTLMFGILEFGLLKALCF 71
PR P FAI+ ++ L +G+L GLL LCF
Sbjct: 162 PRDGPFELNDVFAIANAAPAISLLAYGLLNRGLLPGLCF 200
>09_03_0044 -
11855569-11855664,11855775-11855891,11856572-11856682,
11856768-11856874,11857182-11857221,11857328-11857408,
11857578-11857631,11857800-11857860,11857984-11858029,
11858276-11858352,11858448-11858563,11858654-11858890
Length = 380
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 88 TIQIQECRTSKCLQGALIRRLRKKLLQGSELTSV 189
T +I +CR+ KC Q +IR ++ K+ +GS ++ V
Sbjct: 233 TARIWDCRSGKCTQ--VIRPVKNKIFEGSWVSCV 264
>12_02_0489 -
19619623-19619748,19619850-19620165,19620487-19620747,
19621320-19621710,19622242-19622254
Length = 368
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 457 WLEQTM*SLSIYMRHKSKASSISQSTIFMLNRLLLNGYKKIFQNGNQVSWS 609
W+ S+ IY+ K SI + I + ++L+G +++ N N WS
Sbjct: 282 WISCCPASVKIYLNQAYKGISIYEDIITFVKNMILHGRQEL-MNANGGRWS 331
>11_02_0093 - 8238947-8239615
Length = 222
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 203 LCSCSTEVNSEPCNNFFRNLRMRAPCKHF 117
+C CS + + EPC + R A KHF
Sbjct: 187 ICKCSVDNDDEPCKSSTRQSLKEAFRKHF 215
>09_04_0597 -
18859601-18859818,18860914-18861083,18861250-18861303,
18862759-18863284,18864465-18864663,18866787-18866852,
18866999-18867300,18867394-18867634,18867716-18867973,
18868076-18868207
Length = 721
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 42 DETTSKEDNKKQRAFNNPNSRMPNIKVFT 128
DE Q++ NNPN MP+I FT
Sbjct: 458 DELGENHSPSLQKSANNPNRGMPSIGAFT 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,348
Number of Sequences: 37544
Number of extensions: 292259
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -