Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L04
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.79 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   9.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 167 CNNFFRNLRMRAPCKH 120
           C+ +FR L    PCKH
Sbjct: 53  CSPYFRELLKSTPCKH 68


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 514 SSISQSTIFMLNRLLLNGYKKIFQNGNQV 600
           SS+S S  +  N    N YKK++ N N +
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKKLYYNINYI 333


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 92  IVKSPLFFIIFFACGFVRVHLVNLIVKRTP 3
           IV   L +++ F  GFV   +  +++ R P
Sbjct: 33  IVPITLTYVVIFVTGFVGNIITCIVIWRNP 62


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 195 TTKKFSNKETNVEIGESVRGEDV 263
           TT  F N E   ++GE    E V
Sbjct: 54  TTSPFKNTEIKFKLGEEFEEETV 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,404
Number of Sequences: 438
Number of extensions: 3632
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)