Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L03
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   5.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   5.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   10.0 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   10.0 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   10.0 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   10.0 

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 282 VDLKNNNGVGHFVSHLVEFGPDHLAGSAPSRH 187
           +D  +++G+ H         PDH    +PS H
Sbjct: 23  LDNNDSSGIPHSAESSASNSPDHYERFSPSTH 54


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 80  LIYNITVFKHKAANHTAYV 24
           L YNI + +H + N T YV
Sbjct: 233 LSYNILLRRHYSMNSTTYV 251


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 58  NTVILYISVNKFL*YKMSIHIKDFD 132
           N VI YI+ ++F   +   ++ DFD
Sbjct: 4   NNVIKYINFDRFFFIEGMTNVLDFD 28


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 30  GCMICCLVFKYCDII 74
           GC + C ++KY  +I
Sbjct: 314 GCEVLCPLYKYLQLI 328


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 30  GCMICCLVFKYCDII 74
           GC + C ++KY  +I
Sbjct: 329 GCEVLCPLYKYLQLI 343


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 106 MSIHIKDFDDLKTRLSEAGDKLVVID 183
           M  +++   DL TR+S A D   V+D
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVD 344


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 106 MSIHIKDFDDLKTRLSEAGDKLVVID 183
           M  +++   DL TR+S A D   V+D
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVD 344


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 82  VNKFL*YKMSIHIKDFDDLKTRLS 153
           VNK + YK +I   D + +KT LS
Sbjct: 63  VNKGVTYKHTIIEMDSNPIKTALS 86


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 103 KMSIHIKDFDDLKTRLS 153
           K  +   ++DD+KT LS
Sbjct: 293 KKEVEDMEYDDIKTELS 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,668
Number of Sequences: 438
Number of extensions: 1948
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)