Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_L01
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.53 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.53 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   6.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.5  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 17  IVFCTYNLFTNVTMSEAFFDEYDYYNFD 100
           IV    +L T     E + D+YDY N D
Sbjct: 6   IVILILSLLTWTYAEELYSDKYDYVNID 33


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 17  IVFCTYNLFTNVTMSEAFFDEYDYYNFD 100
           IV    +L T     E + D+YDY N D
Sbjct: 6   IVILILSLLTWTYAEELYSDKYDYVNID 33


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 150 GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 254
           G P NTR   TP + LE             +PI N
Sbjct: 140 GNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGN 174



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 261 YIYCLLDFLLFSVFTNFVTIFLEC 190
           Y++ LLD    S F     +F EC
Sbjct: 440 YVFQLLDSYAVSGFCLLFLMFFEC 463


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 150 GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 254
           G P NTR   TP + LE             +PI N
Sbjct: 193 GNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGN 227



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 261 YIYCLLDFLLFSVFTNFVTIFLEC 190
           Y++ LLD    S F     +F EC
Sbjct: 493 YVFQLLDSYAVSGFCLLFLMFFEC 516


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 134 KQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNKQ 253
           + R KRE          S  S   ++ + N  NN   NK+
Sbjct: 66  RSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKK 105


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 360 RPAASSGIRHNVLLSLGNSVIFLLQAI 280
           RP+   G++ +VL+ +  +  +LLQ I
Sbjct: 121 RPSKKEGLQFDVLVKVDMTRQYLLQLI 147


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 360 RPAASSGIRHNVLLSLGNSVIFLL 289
           RP   SGI    ++S  N  +F+L
Sbjct: 847 RPIVQSGIFGKYMVSPSNDALFVL 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,116
Number of Sequences: 438
Number of extensions: 2607
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)