Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_K22
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 45 1e-05
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 38 0.001
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.31
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.96
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 28 1.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 6.8
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 25 9.0
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 25 9.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 9.0
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 9.0
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 25 9.0
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 44.8 bits (101), Expect = 1e-05
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Frame = +3
Query: 234 RVWSDTDLVAQATLFFVAGFETISSTMSFILHELAVNPDAQEKLLNE-IKEHEA*NDGKF 410
R +SD ++ F A + SS M+++ LA +PD +K+ E ++ + D
Sbjct: 302 REFSDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPL 361
Query: 411 NYNSIQDLKYMDMVISEVLRLWPPAVGLERYCVKDYNIGKANDKADKDYIVRKGNSVLIP 590
+ + ++ + Y V+ E LRL PP + + Y + KA DY V K V+
Sbjct: 362 SLDLMEKMTYTRAVVKECLRLRPPVL------MVPYRVKKA-FPITPDYTVPKDAMVIPT 414
Query: 591 AWSLHHDPKYFP 626
+ HD K +P
Sbjct: 415 LYGALHDSKVYP 426
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 37.9 bits (84), Expect = 0.001
Identities = 31/127 (24%), Positives = 55/127 (43%)
Frame = +3
Query: 102 RPDMIHLLMEAKKGKLTYDETLTATADTGFSTVEESDIGKKTVNRVWSDTDLVAQATLFF 281
R D H +M+ K+ D ++T + G + K R + ++
Sbjct: 228 RRDRAHKIMQKTYLKIIKDRR-SSTENPGTDMIWTLMSCKYRDGRPLKEHEIAGMMIALL 286
Query: 282 VAGFETISSTMSFILHELAVNPDAQEKLLNEIKEHEA*NDGKFNYNSIQDLKYMDMVISE 461
+AG T ++T+ ++L L P+ E L E K N + ++ +D+ ++ VI E
Sbjct: 287 MAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENL-ELKFDQYKDMPLLNYVIQE 345
Query: 462 VLRLWPP 482
LRL PP
Sbjct: 346 TLRLHPP 352
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.9 bits (64), Expect = 0.31
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 192 STVEESDIGKKTVNRVWSDTDLVAQATLFFVAGFETISSTMS-FILHELAVNPDAQEKLL 368
S +E+ D + +VW Q LF V G E S+TMS + L E+ + ++LL
Sbjct: 1462 SRLEDGDNMAEKTQQVWHVNPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELL 1521
Query: 369 NEIKE 383
N+ +
Sbjct: 1522 NKFPD 1526
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.96
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = -2
Query: 409 NLPSF*ASCSLISFSNFS*ASGLTASSCSMNDMVEDIVSKPATKNSVACATRSVSDQTLL 230
++PS +S S S S S +S TASS S + I+S ++ +S +T S +
Sbjct: 239 SIPSTSSSSSSTSSSLSSSSSSSTASSSSSS---SSIISSSSSSSSSPTSTSSTISSSSS 295
Query: 229 TVFLPISDSSTVEN 188
+ P S SST+ +
Sbjct: 296 SSSSPTSTSSTISS 309
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/91 (23%), Positives = 37/91 (40%)
Frame = -2
Query: 391 ASCSLISFSNFS*ASGLTASSCSMNDMVEDIVSKPATKNSVACATRSVSDQTLLTVFLPI 212
A+ S IS + + + A V V+ PA +SVA + V+ ++ P+
Sbjct: 50 AAASAISTNGAAKEAATAAGDAETTSSVAASVT-PAASSSVAASVTPVASSSVAASVTPV 108
Query: 211 SDSSTVENPXXXXXXXXXXXXSLPFLASMSK 119
S S+ V++ S +AS S+
Sbjct: 109 SSSAVVDSATSAAASSSVIPTSSSVVASSSE 139
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 69 SMKEREIHKILRPDMIHLLMEAKKGKLTY 155
S+KE ++ LRPD+ L E +G L +
Sbjct: 470 SLKEAVVYPFLRPDLFQGLREPARGMLLF 498
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +3
Query: 345 PDAQEKLLNEIKEHEA*NDGKFNYNSIQDLKYMDMV 452
P+ +E L + EH+ +D Y +QD + +++
Sbjct: 1347 PEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELI 1382
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 278 LRRWF*NYIFDHVVHT 325
L++ F Y FDH+VHT
Sbjct: 113 LQKGFKTYFFDHLVHT 128
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 9.0
Identities = 23/101 (22%), Positives = 44/101 (43%)
Frame = +3
Query: 129 EAKKGKLTYDETLTATADTGFSTVEESDIGKKTVNRVWSDTDLVAQATLFFVAGFETISS 308
E +G T E+ ++ +++ + ++NR++++ AQ L G +SS
Sbjct: 395 EIIQGNRTIQESNNDRDESTVASIHRHNFDSDSINRLYAE----AQLELKQRDG--VLSS 448
Query: 309 TMSFILHELAVNPDAQEKLLNEIKEHEA*NDGKFNYNSIQD 431
T + + DAQE+ + +K H N NS+ D
Sbjct: 449 TKQQLSDLMTALGDAQERYVELVKNHRV-NSNLTANNSLND 488
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 66 SSMKEREIHKILRPDMIHLLMEAKKGKLTY 155
+S+KE I+ LRP++ L E +G L +
Sbjct: 389 NSLKEAVIYPFLRPELFQGLREPVQGMLLF 418
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 492 LERYCVKDYNIGKANDKAD-KDYIVR 566
LE++C KD I K+ND ++ +Y V+
Sbjct: 800 LEKFCFKDSTIPKSNDFSNITEYYVK 825
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 162 TLTATADTGFSTVEESDIGKKTVNRVWSDTD 254
TL T D G + +++GK+ +N V + D
Sbjct: 231 TLQQTKDVGGAIAPAAEVGKEVINEVENSKD 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,252
Number of Sequences: 5004
Number of extensions: 43723
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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