Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K21
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    24   3.1  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    23   5.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   5.4  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    23   7.2  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    23   7.2  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 100 IWTSFKQINYSNCDYNRKMS*NSKIIS 20
           IWT F +++Y  C      S  SKI+S
Sbjct: 256 IWTPFSELHYFYCATPITFSIASKILS 282


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 59  ITI*VINLFE*CPDTASGISLVKYTLEILEQ 151
           + I +IN+   C + +S ISL++  L I+E+
Sbjct: 48  LEIKIINIESKCNELSSEISLLRKRLGIIEE 78


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 84  NKLITQIVIITEK*VETPKLYH 19
           N+++ +I    EK VE P  YH
Sbjct: 147 NRILKRIDFFIEKVVEVPPTYH 168


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 160 WTRLFQDFQRILYKRDPTRGIWTSFKQINYS 68
           WT   Q   RI   + P   +WTS     +S
Sbjct: 84  WTTTAQSTCRIFDLKHPENDLWTSTNMDQFS 114


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 138 SNVYFTREIPLAVSGHHSNKLITQIVIITE 49
           SNVYF  +  L VSG  +++    I  IT+
Sbjct: 205 SNVYFAAKYNLNVSGTVAHEWYMGIAAITQ 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,889
Number of Sequences: 5004
Number of extensions: 8939
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)