Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K21
         (162 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322...    25   8.3  
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320...    25   8.3  

>09_03_0096 +
           12328116-12329561,12329810-12329852,12332119-12332237,
           12333326-12333853
          Length = 711

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 150 CSKISNVYFTREIPLAVSGH---HSNKLITQIVIIT 52
           C K+     TREI  A   H   H + +I Q +++T
Sbjct: 485 CGKVGKTIMTREISTAAPRHLLVHFDAVIHQSIVLT 520


>01_01_0424 +
           3200223-3200634,3200677-3200836,3200987-3201342,
           3201958-3203252
          Length = 740

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 159 GRVCSKISNVYFTREIPLAVSGHHSNKLITQIV 61
           GR+ S ISN+   +++ L  SG  S KL + IV
Sbjct: 279 GRIPSSISNIKSLKKLDLGASG-FSGKLPSSIV 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,906,852
Number of Sequences: 37544
Number of extensions: 47411
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)