Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K20
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    30   1.6  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   3.7  
AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical...    28   4.9  
Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 339 IKYTRHFLYIKKKIYSFKQISLVFTLIAIYNTLNNKSKPVRVAFILWLIICF-IPFILFG 515
           ++ T H L     I SF +    +  +   N ++N  + + V F+L   ICF I F+ FG
Sbjct: 114 LQQTFHLLLFSLAIMSFLKYHFPYDFLYSQNYISNYVRKLNVFFVLKDFICFAIYFLNFG 173


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 405 VFTLIAIYNTLNNKSKPVRVAFILWLIICFIPFILFG 515
           +F L A Y++   KSKP+ +   +W +I F   I FG
Sbjct: 355 IFVLSANYSSDRTKSKPIEMCVGVWCVI-FALIITFG 390


>AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical
           protein Y113G7B.9 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 452 LRFVIQSVINSYKSKNQRYLFK---TIDFFFDV*KMSSIFNTNVN 327
           +  V++ V+N  K KN  YLF    T+D FF     S I  T +N
Sbjct: 24  INLVVKIVLNPSKRKNDMYLFYYRFTLDIFFGAGLFSYIAYTLLN 68


>Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical
           protein F14F8.3 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 217 LYTSMMSI-LNSKFLVYCIMVNYSFFLDYNEN*RHFAKFTFVLNILDIFYTS 369
           +YTSM S+ L S FLV   ++ +  F+  N   R   + T +  I + FY S
Sbjct: 17  IYTSMFSLFLLSIFLVILFIIIFPIFVILNRANRRRDEKTAIYPITNYFYKS 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,383
Number of Sequences: 27780
Number of extensions: 234023
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)