Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K14
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    29   0.45 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   3.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.6  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   7.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.7  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    25   9.7  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 451 PDRNS-HCYSHYYRTHQTCDYNAL 519
           P +NS  C  HYY T +T DY AL
Sbjct: 278 PGKNSKECVLHYYLTKRTTDYRAL 301


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 368 IAAPPPLQIISQKHPETAPSVSSTKARSQIV 460
           I+ P P   +    PETAP++S     +Q+V
Sbjct: 252 ISQPSPAHPVDLSSPETAPNISPVSPFAQLV 282


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 68  SLKNNIKKPSETNDYKRAKSNEEKQDTSQGSFTVYQMRPKSGVNAA 205
           +L N    P+ T +YKR  S+   +D +   +     +PKS VN +
Sbjct: 363 NLTNTAAAPT-TYEYKRPTSSYTAKDATSKVYRSNTYKPKSSVNGS 407


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 302 RDVNCSFQILDEDECILPDDDSIAAPPPLQIISQKHPETAPSVSST 439
           ++VN     +D+   +LPD  SI + PP  +   K P+ A  V S+
Sbjct: 218 KNVNSKHSEIDD---LLPDKRSIVSLPPSTLNLHKQPDYAHVVDSS 260


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 TLPPLRSAPHNSIAMLFQLDCSKVLQIYKRRRIFNETSTAVF 323
           TLP + SA  + +  L+++  SK  ++   R  FN  S  +F
Sbjct: 223 TLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLF 264


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
 Frame = +2

Query: 353  PDDDSIAAPP------PLQIISQKHPETAPSVSSTKARSQIVXXXXXXXXXXXXXXXXXM 514
            P   S  APP      P  + +   P   PSV+     S                    +
Sbjct: 1470 PAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHV 1529

Query: 515  PCKVTSGPQEPAAATPAFTGGDNAYAH 595
            P      PQ P+AA  +    DN+  H
Sbjct: 1530 PSPAPPAPQHPSAAALSSAPADNSMPH 1556


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 200 RSHRSSDASGRP*TNPETYPASLHSTLP 117
           RS   S  SGRP  +P     S+ STLP
Sbjct: 346 RSRSPSPRSGRPRRSPSPSHLSIPSTLP 373


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 290 ENFQRDVNCSFQILDEDECI-LPDDDSIA 373
           + FQ  V+    +LD+D CI LP++ +IA
Sbjct: 43  QKFQVPVDIRALVLDKDNCITLPNETTIA 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,140
Number of Sequences: 5004
Number of extensions: 47333
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)