Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_K14
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 33 0.15
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 29 3.3
09_01_0016 - 376742-376883,377973-378964 29 3.3
07_01_0463 + 3502708-3503535 29 3.3
12_02_1175 + 26702744-26704507 29 4.4
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803... 29 4.4
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 28 7.6
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 28 7.6
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +2
Query: 62 EESLKNNIKKPSET--NDYKR---AKSNEEKQDTSQGSFTVYQMRPKSGVNAAPPAVRPP 226
EE ++NN + T ND R N E++ + +F + P G N+ PP + P
Sbjct: 192 EEWVRNNARANERTRRNDRPRNFDRSRNFERRRENMHNFQNRDVPPGQGFNSPPPPGQGP 251
Query: 227 QLNCDVVPVGLFKGPANLQAPENFQ 301
L D P+ P N AP ++Q
Sbjct: 252 VLPRDAPPMPPPPSPPNPGAPPSYQ 276
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/71 (25%), Positives = 22/71 (30%)
Frame = +2
Query: 398 SQKHPETAPSVSSTKARSQIVXXXXXXXXXXXXXXXXXMPCKVTSGPQEPAAATPAFTGG 577
S HP A + S+ AR P +G P A P F GG
Sbjct: 17 SHHHPSAAAAASAASARLHASAQPASAAASASAAAAALCPPFPAAGAACPPAQGPIFGGG 76
Query: 578 DNAYAHTHQQE 610
A QQ+
Sbjct: 77 PGAKPWVVQQQ 87
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 29.1 bits (62), Expect = 3.3
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Frame = +2
Query: 92 PSETNDYKRAKSNEEKQDTSQGSFTVYQMRPKSGVNAAPPAVRPPQLNCDVVP------- 250
P E++D + + ++ S G+ T + P PP PPQ N V
Sbjct: 28 PQESSDGEDLELESSEELDSHGAPT--KKAPFVAPPPPPPPPPPPQQNGKEVSDSPSLPT 85
Query: 251 ---VGLFKGPANLQAPENFQRDVNCSFQILDEDECILPDDDSIAAPPPLQIISQKHPETA 421
+ L P LQA +N Q + S D+DE LP +++I PP S+ ++
Sbjct: 86 NSAIVLSPLPPPLQANKNHQDQDSESDSDSDDDEPPLPTNNAIVLAPPNNQESESDSDSD 145
Query: 422 PSVSSTKARSQIV 460
S ++IV
Sbjct: 146 DDQESALKANKIV 158
>07_01_0463 + 3502708-3503535
Length = 275
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 20 KKPTATLE--VEHVRPEESLKNNIKKPSETNDYKRAKSNEEKQDT 148
+KP TLE +EH +P E +KP+ET + R N EK++T
Sbjct: 232 EKPAQTLEKGIEHNKPIE------EKPAETVEGSRECKNNEKEET 270
>12_02_1175 + 26702744-26704507
Length = 587
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 347 ILPDDDSIAAPPPLQIISQKHPETAP 424
+L DD A+PPPL + S P +AP
Sbjct: 303 LLVVDDDDASPPPLPVSSSSKPTSAP 328
>04_01_0611 -
8029101-8029205,8029985-8030107,8030191-8030556,
8030639-8031124
Length = 359
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 20 KKPTATLEVEHVRPEESLKNNIKKPSETNDYKRAKSNEEKQ 142
++ A + E EE +KN + PS D+ K ++EK+
Sbjct: 159 RRRKAKIVEEDQEEEEDVKNEVAVPSRKKDFTMVKEDQEKK 199
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Frame = +2
Query: 50 HVRPEESLKNNIKKPSETNDYKRAKSNEEKQDTSQGSFTVYQM-RPKSGVNAAPPAVRPP 226
++ P ++ KK D+ A E+++ + + +M R S ++A+
Sbjct: 51 YISPSRDEEDKEKKARRGGDFAGAGEEREEEEVGRNDDKILEMMRSFSFMHASEEDFMEG 110
Query: 227 QLNCDVVPVGLFKGPANLQAPENFQRDVNCSFQILDEDECILPDDDSIAAPPPLQIISQK 406
D V + P L P SF+ + IL + ++ P+Q++ +
Sbjct: 111 MATYDHVVARMAPEPLPLTPPAA-PPPSTFSFRFQHQLPEILRETAVVSGEIPVQVLEEH 169
Query: 407 HPETAPSVS 433
PE P+++
Sbjct: 170 EPEKKPAIA 178
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 32 ATLEVEHVRPEESLKNNIKKPSETNDYKRAKSNEEKQ 142
A + E +P+++ K K+P E ++ KS EEK+
Sbjct: 81 AEAKKEEKKPDQAKKEEKKQPEEKKPEEKKKSEEEKK 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,766
Number of Sequences: 37544
Number of extensions: 332709
Number of successful extensions: 1166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -