Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K13
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    29   0.45 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   1.8  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.2  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    26   4.2  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    26   5.5  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   7.3  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   7.3  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   9.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.7  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.7  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 21/104 (20%), Positives = 47/104 (45%)
 Frame = +2

Query: 317  QLVSPRDVTPGLAQMTTYNYLNVIPHWSSCGTKNWEEVENRLRALVKSIDYSLTVWTGTS 496
            +++  + +   + +     +L+V P  +S    +W  + NR  +   +  ++ T++T  S
Sbjct: 1285 EVLLTKKIDESMIKSLLQRFLHVYPFAAS----SWTLLTNRYASKSLANAFATTLYTHPS 1340

Query: 497  KPLELPDADSKMTEINLSDSELHSQPVPQYLWKVVQDGVTKSSL 628
            +P +L  +      I+ +   +H  P     WK +  GVT  +L
Sbjct: 1341 RPDDLAQSYRLQNSIDRAQVAIHLVPWDSANWKALH-GVTHEAL 1383


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 39  TPNGLKSAMKNSVNFYLRTVCAWIREIISLFTRNT 143
           TP+ L +A +  V FYL   C +I E + + T+NT
Sbjct: 93  TPSRLNTAHRPEV-FYLLECCTYILEQMQVVTKNT 126


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 428 VENRLRALVKSIDYSLTVWTGTSKPLELPDADSKMTEINLSDSELHSQPVP 580
           +ENR ++L++ I     + T  S+  +   A+   TEI   D    S+P P
Sbjct: 428 LENRWKSLLQEISSQKQLSTDASQTQDASIANENETEIASLDEGSESKPTP 478


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 212 KATRHRRPISNSQVLFQLNTYPYCVSRK*GYYFSYPSTHCTQIKID 75
           ++T+ R+      V F  + Y    S K G YF+ P  +  Q K+D
Sbjct: 223 RSTQRRKSKPKKHVAFT-DEYQVAFSDKPGKYFNQPMQYSKQFKLD 267


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +2

Query: 389 PHWSSCGTKNWEEVENRLRALVKSIDYSLTVWT------GTSKPLELPDADSKMTEINLS 550
           PH     T+NW+  EN +  +++S+ + L +W+      G  +   + D  +K TE  LS
Sbjct: 89  PHSWIYATRNWQTNENGIVIIIQSMSHPL-IWSNRNLREGDVRRATVLDVIAKCTEKKLS 147


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 188 WVVGDASPFNFDEMYDCVSQK---NAISEDLSEWFHYDDSCCFTKRQLVSPRDVTPGLAQ 358
           +V GD S   FDE  +C+SQ+    A+   +   FH   S       +++   V+P L  
Sbjct: 103 YVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKN 162

Query: 359 MTTY 370
              Y
Sbjct: 163 SAHY 166


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 405 QELQCGITFK*L*VVICANPGVTSRGLTNCLF 310
           Q +     F  L VVI A+PG  +RGL + +F
Sbjct: 191 QSINSEFDFDKLKVVILASPGFVARGLYDYIF 222


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +2

Query: 29  FYGDTEWIKIGYEKFGQFLSAYSVCLDKRNNIPIYAKHNMDRYL 160
           FYGD  W+K+    F +F    S  +     +      N D  L
Sbjct: 144 FYGDDTWLKLFPSAFSKFEGTTSFFVSDYTEVDNNVTRNFDHAL 187


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 389 PHWSSCGTKNWEEVENRLRALVKSIDYSL 475
           P W   GT + + + N++ +L K  DY L
Sbjct: 211 PSWIRIGTFDLQGINNQIESLRKLADYCL 239


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 485 TGTSKPLELPDADSKMTEINLSDSELHSQPVPQY 586
           T  S    +P   S  T  + SD+E+   P+P Y
Sbjct: 92  TAPSSAQSVPPTSSAETTADNSDTEMKLNPIPAY 125


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 201 SPTTHFELSGSIPAKYLSILCFA*IGILFL---LSKHTLY 91
           S T H+    S+P  ++ +L F+  G+LFL   L +HT Y
Sbjct: 181 SRTYHYR---SLPGTWIFVLVFSAFGVLFLGVMLVRHTGY 217


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 65  EKFGQFLSAYSVCLDK 112
           EK+GQFL A+++ LDK
Sbjct: 168 EKYGQFLWAHNIELDK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,021
Number of Sequences: 5004
Number of extensions: 56323
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)