Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K13
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0393 - 17630097-17630367,17630483-17630709                       29   2.5  
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443...    29   2.5  
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110...    29   4.3  
07_01_0297 - 2156960-2157736                                           29   4.3  
07_03_1089 - 23879483-23881909                                         28   7.6  
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318...    28   7.6  
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041...    28   7.6  

>07_03_0393 - 17630097-17630367,17630483-17630709
          Length = 165

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 213 KGDASPTTHFELSGSIPAKYLSILCFA*IGILFLLSKHTLYADKN*PNFS 64
           KGD   +  + L  ++P  YL +  F+ + +L LLS   L AD   P  S
Sbjct: 70  KGDGRVSILYVLDENVPIFYLCLSSFSPLSLLMLLSDPNLGADNASPLLS 119


>01_07_0257 -
           42343493-42343528,42344215-42344271,42344272-42344316,
           42344374-42344518,42344606-42344733,42344939-42345044,
           42345113-42345189,42345264-42345361,42345945-42346058,
           42346154-42346294,42346418-42346502,42346721-42346849
          Length = 386

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 206 SPFNFDEMYDCVSQKNAISEDLSEWFHYDD--SCCFTKRQLVSPRDVTPGL 352
           SPF+ D +  C    +A + D S +  Y D  SCC  +  L   R + P L
Sbjct: 103 SPFDDDNLIPCFGFGDASTHDQSVFSFYQDSRSCCGFEEVLERYRQIVPHL 153


>08_02_0603 +
           19208177-19210033,19210581-19210618,19210937-19211059,
           19211471-19211852
          Length = 799

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 212 FNFDEMYDCVSQKNAISEDLSEWFHYDDSCCFTKRQLVSPR 334
           +     + CV  +N + + L  +F Y D   F KR L + R
Sbjct: 614 YGIKSTFSCVPLRNGMLQRLPVYFVYGDGSIFQKRNLATQR 654


>07_01_0297 - 2156960-2157736
          Length = 258

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 434 NRLRALVKSIDYSLTVWTGTSKPLELP--DADSKMTEINLSDSELHSQPVPQYL 589
           +RLR       + L  W     P  LP  + D ++T  +L D E+H  PVP  L
Sbjct: 51  DRLRFRAVCRRWRLAAWQQHPLPPALPWLNLDGRITYQSLPDGEVHRIPVPDEL 104


>07_03_1089 - 23879483-23881909
          Length = 808

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = -3

Query: 630 ARDDLVTPSCTTFHKYCGTG*LCNSESLKFISVIFESASGSSKGLLVPVQTVNE*SMLLT 451
           AR  L  P+ + FH   G+G L   +   F ++I  SA G    L  P  T    S+L +
Sbjct: 138 ARASLAAPAVSVFHALLGSGSL-RPDDYSFTALI--SAVGQMHNLAAPHCTQLHCSVLKS 194

Query: 450 KALNLFSTSSQFLVPQELQC 391
            A  + S S+  L+   ++C
Sbjct: 195 GAAAVLSVSNA-LIALYMKC 213


>06_01_0450 +
           3185342-3185645,3185761-3185837,3185948-3186028,
           3186508-3186636,3186765-3186851,3186962-3187015,
           3187432-3187522,3187615-3187685,3187770-3187839,
           3187988-3188040,3188132-3188225,3188569-3188666,
           3190126-3190209
          Length = 430

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +2

Query: 32  YGDTEWIKIGYEKFGQFLSAYSVCLDKRNNIPIYAKHNMDRYLAGIEPESSKWVVGDASP 211
           Y   EW++   E +       SV +D R     Y     +     I+   S W  GDA P
Sbjct: 186 YKCKEWLRPLLEAYAS-RGYISVAIDSR-----YHGERANNNSTYIDALKSAWRNGDAMP 239

Query: 212 FNFDEMYDCVSQKNAISE 265
           F  D ++D +   + +SE
Sbjct: 240 FILDTVWDLIKLGDHLSE 257


>04_03_1037 -
           21901989-21902468,21903308-21903526,21903984-21904106,
           21904225-21904392
          Length = 329

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 167 IEPESSKWVVGDASPFNFDEMYDCVSQKNAI 259
           +E +  K +  D S F +DE+YD + QK A+
Sbjct: 57  VEEQQKKAMEEDPSVFAYDEVYDDMKQKAAL 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,831
Number of Sequences: 37544
Number of extensions: 324175
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)