Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K12
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   2.6  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   2.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   3.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   6.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    24   8.0  

>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  YLQWQCLYNIYEFIHYLSNVNY*KKTFTFINQL 178
           +LQ  C Y IY+ +  +  +++    F  +N+L
Sbjct: 144 WLQDVCFYVIYKLVEQIPEISFSSNAFLAVNKL 176


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 142 LLKKNFYIY*STLIYETCYKFISWRTVNKNKSCEIL-HNFTYKH 270
           LLK N Y   ST  YE  YK +S    N N   E+L H+    H
Sbjct: 215 LLKYNSYRLLST--YENSYKELSEMLTNNNAPLEVLIHHVMLYH 256


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 83  LQWQCLYNIYEFIHYLSNVN 142
           L WQ L+N+YE  H +S ++
Sbjct: 71  LAWQGLWNLYESTHDISELH 90


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 160 YIY*STLIYETCY-KFISWRTVNKNKSCEILHNFTYKH 270
           +++ S LI   C  KF SW  V K+ +  I+HN   K+
Sbjct: 398 FVWKSALICVLCERKFQSWGHVVKHITQSIMHNNNLKN 435


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 6/19 (31%), Positives = 16/19 (84%)
 Frame = +1

Query: 178 LIYETCYKFISWRTVNKNK 234
           L+Y++ Y++I+W  +++N+
Sbjct: 82  LLYKSKYEYITWDLIDENR 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 947,611
Number of Sequences: 5004
Number of extensions: 14722
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)