Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_K10
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    33   0.056
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    30   0.39 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   1.6  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   1.6  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    27   3.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.8  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.8  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   6.4  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   8.4  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.4  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   8.4  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 32.7 bits (71), Expect = 0.056
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 19  MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 153
           MFGK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 1   MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 719 Y*ESENPKLGSQEDFMKGVSNFLKRALKSTEVSGLLKRF 603
           Y ESE+P + S  D    +S    R    TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 148 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 324
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 325 V 327
           +
Sbjct: 500 L 500


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 20  CSGRSSFYCLSLCASAFKAD 79
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 526 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFN 642
           +KI ASAT    DFI  N+      +N F S DTS++ N
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESN 151


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = -1

Query: 662 SNFLKRALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 516
           SNF++R  +S  V G+   FSF SRE S R +K + +A+   P L ++I
Sbjct: 587 SNFVERWFQS--VIGV---FSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 649 FKKFDTPFMKSSWEPNFGFSL 711
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 311 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 135
           TP + APS      S   ++  + ++ P +  T +P+P + S  S  +P  SLR   L  
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358

Query: 134 SSGSS 120
            S  S
Sbjct: 359 KSAKS 363


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 332 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 186
           P T  S++  V++        S    + T+ ++ PA  + TP P  PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 565 FINRNDYSLDGKLNLFKSPDTSVD 636
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 553 AHTDFINRNDYSLDGKLNLFKSPDTSVDFNARFKKFDTPFMKS 681
           +H +F + ND+S   KLN   S  +       +K+   PF K+
Sbjct: 158 SHDNFSDSNDFSFQKKLNTEDSNTSKTSTLDMYKEKLKPFTKT 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,975
Number of Sequences: 5004
Number of extensions: 60029
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)