Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_K08
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 31 0.13
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.40
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.53
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 29 0.71
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 29 0.71
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.93
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.2
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 1.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 2.8
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 3.8
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.0
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 5.0
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 6.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.7
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 25 8.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Frame = +1
Query: 466 TVREIEANIKHINDNLENDHGLQQE-------YATMDGQCLEYEDKEYVYKLCMFQ 612
TVRE++ + +++ +LE DH L +E Y DG+ ++ + Y C+FQ
Sbjct: 208 TVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQ 263
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 29.5 bits (63), Expect = 0.40
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 85 DRNKDGEVDDEEAKFFFNGDEK---VDLEKFMSVTWPLLKPLLMMEQG--MFKPADSQVE 249
D +++ EVDDEE + F + K + ++ P ++ + + + +D + +
Sbjct: 177 DSDEEDEVDDEEIESFNSFSRKMQTISNSRYRGSPKPNIEKQSCSSESDRVSQISDDEED 236
Query: 250 KEHSEDEPEENQADLD-TEYEGQDDEAS 330
+E S DE +E +D++ +E DDE S
Sbjct: 237 EEGSADEEDEEDSDVELSESSLSDDEDS 264
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 0.53
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 247 EKEHSEDEPEENQADLDTEYEGQDDEASD 333
+K+ ED EEN+ + D E ++DE D
Sbjct: 92 DKKEDEDNVEENEEEADANEEEEEDEEDD 120
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 28.7 bits (61), Expect = 0.71
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 82 FDRNKDGEVDDEEAKFFFNGDEKVDLEKFMSVTWPLLKPLLMMEQGMFKPADSQVEKEHS 261
FDR+ V E + + GD + E + +++ G K ++EK
Sbjct: 254 FDRDVQCIVQYFEKNYQYKGDVP-NFEDISKMEKENNLDIMIEASGFNKKQSKELEKYRQ 312
Query: 262 EDEP-EENQADLDTEYEGQDDE 324
E+E +EN DL YE +++E
Sbjct: 313 EEEKRKENGDDLSDNYEEEEEE 334
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 28.7 bits (61), Expect = 0.71
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +1
Query: 91 NKDGEVDDEEAKFFFNGDEKVDLEKFMSVTWPLLKPLLMMEQGMFKPADSQVEKEHSEDE 270
+KD E ++E+ + F+ ++ +E + P + ME + K A +++ K SED
Sbjct: 141 SKDSETNEEQERKFWLTKLQIAVEDTLDSL-----PHIEMEIDLLKRAQAELMK--SEDS 193
Query: 271 PEENQADLDTEYEGQDDEAS 330
PE+++ L E Q + +S
Sbjct: 194 PEKDEETLRREERKQKEGSS 213
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 247 EKEHSEDEPEENQADLDTEYEGQDDEASD 333
+K+HSE +PE D + E E DD+ D
Sbjct: 186 KKQHSEAQPEVQGNDDEVEEEDDDDDDED 214
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +1
Query: 232 ADSQVEKEHSEDEPEENQADLDTEYEGQDDEASDVXXXXXXXXXXXXXXXHSSSYDEETQ 411
+ S+ E+E E E + + +E + +SD SSS DE+ +
Sbjct: 180 SSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEK-K 238
Query: 412 RLVDEASEAR 441
R + ASE R
Sbjct: 239 RKAEPASEER 248
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +1
Query: 397 DEETQRLVDEASEARRLHTDAERTVREIEANIKHINDNLENDHGLQQEYATMDGQCLEYE 576
+E +++ D E ++L + ER E E + L++EY + +CL+++
Sbjct: 142 EEFERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRNECLKHD 201
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/93 (24%), Positives = 37/93 (39%)
Frame = +1
Query: 238 SQVEKEHSEDEPEENQADLDTEYEGQDDEASDVXXXXXXXXXXXXXXXHSSSYDEETQRL 417
S+ E+E E+E EEN+AD +T ++++ + DE T +
Sbjct: 310 SEEEEEEEEEEEEENEADDET----RENKRQNRLVREFISELESSIQKRRKDADEATNPI 365
Query: 418 VDEASEARRLHTDAERTVREIEANIKHINDNLE 516
+ R D R V E+E + DN E
Sbjct: 366 L-----RNRFLADVNRMVTELELKRTQLVDNPE 393
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 400 EETQRLVDEASEARRLHTDA-ERTVREIEANIKHINDNLENDHGL 531
E L+ E + T++ + T+RE E + K +NDNL N +
Sbjct: 756 ENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENI 800
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/90 (16%), Positives = 41/90 (45%)
Frame = +1
Query: 58 DEIKVANVFDRNKDGEVDDEEAKFFFNGDEKVDLEKFMSVTWPLLKPLLMMEQGMFKPAD 237
D+ K + D ++++ + + D+ +D+++ + + P + +
Sbjct: 306 DKFKNNPTIPQELDLVEEEDQITHYISLDDNLDVQESLGIFH--YDPDYEENEKKYDAIK 363
Query: 238 SQVEKEHSEDEPEENQADLDTEYEGQDDEA 327
++ E +DE EE++ D + E ++DE+
Sbjct: 364 HEILGEEDDDENEEDEEDSEETSESEEDES 393
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = +1
Query: 232 ADSQVEKEHSEDEPEENQADLDTEYEG--QDDEASDVXXXXXXXXXXXXXXXHSSSYDEE 405
+ S E E S ++ + + + D+E E +D ++S S+S D E
Sbjct: 221 SSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSE 280
Query: 406 TQRLVDEA-SEARRLHTDAERT 468
D + SE+ D++ T
Sbjct: 281 DDSSSDSSDSESESSSEDSDST 302
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 406 FLHHKSLSVLAPTLVHLGHPEVD 338
FL+H LS+ +P+ V GH ++D
Sbjct: 295 FLNHNLLSLCSPSGVLFGHNDID 317
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 91 NKDGEVDDEEAKFFFNGDEKVDL 159
N +GE+DD +F N +E DL
Sbjct: 405 NDEGEIDDVFHNYFHNSNENGDL 427
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 235 DSQVEKEHSEDEPEENQADLDTEYEGQDDE 324
D V++E ED +EN + D E E ++DE
Sbjct: 247 DEDVDEEEEED-DDENNDEGDDEDENENDE 275
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 67 KVANVFDRNKDGEVDDEE 120
K+ N+ D+NKDG++ EE
Sbjct: 151 KIFNMMDKNKDGQLTLEE 168
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/76 (22%), Positives = 30/76 (39%)
Frame = -3
Query: 236 SAGLNIPCSIINNGLSKGQVTDMNFSKSTFSSPXXXXXXXXXXXXXXXXXXXXLATFISS 57
S+ + + I++G+S + + S+ SS +TF S+
Sbjct: 550 SSDFSSSITTISSGISSSSIPS---TFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSA 606
Query: 56 IVSSPSLFESNLSKCS 9
SSPS S++S S
Sbjct: 607 STSSPSSISSSISSSS 622
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.129 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,227
Number of Sequences: 5004
Number of extensions: 36983
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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