Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_K07
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 187 1e-48
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 1e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 45 8e-06
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.4
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 5.4
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 7.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 9.5
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.5
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 187 bits (455), Expect = 1e-48
Identities = 91/162 (56%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Frame = +2
Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 346
LF R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK
Sbjct: 26 LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85
Query: 347 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXD-EPPPKRPNTLRAGTNTVTKLVEK 523
TA +FK+L KYRPET + K+P ++ G N V L+E
Sbjct: 86 TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145
Query: 524 KKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.4 bits (125), Expect = 1e-08
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +2
Query: 482 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
LR G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 45.2 bits (102), Expect = 8e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 467 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 646
K+ + LR G V K V K + LV++A D+ P++++ +P LC VPY K L
Sbjct: 50 KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108
Query: 647 G 649
G
Sbjct: 109 G 109
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 275 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 376
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 288 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 386
S V R Q+TSSP + ++PQ KV + + G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 645 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 559
+ +LPF P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 600 RQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 502
+Q + KS+ +G T+ TTS + F+T+L T
Sbjct: 633 QQISSNKSSEFVGQTTTEYTTSGSVGFTTTLAT 665
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 347 TAKGLFKILEKYR 385
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 627 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 487
T+ I+ +AG + T+S+GS+S A T + A ST V +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,127
Number of Sequences: 5004
Number of extensions: 45625
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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